Pairwise Alignments

Query, 436 a.a., RND efflux system, membrane fusion protein CmeA from Xanthomonas campestris pv. campestris strain 8004

Subject, 426 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  282 bits (721), Expect = 2e-80
 Identities = 166/397 (41%), Positives = 227/397 (57%), Gaps = 19/397 (4%)

Query: 13  AITVALAACSKPEQQQAP----PPPEVSVLEMKPQTLPLERDLVGRLSAFRSADVRARVD 68
           A++  L +C   E  QA     P PEV+V+   PQTL +   L GR  A+RSA+VR +V+
Sbjct: 42  ALSAVLWSCDSQEGGQAAGGARPAPEVTVITAAPQTLRITERLPGRTVAYRSAEVRPQVN 101

Query: 69  GVLLKRLYTEGTDVKEGQPLFEIDPMPLRATLLQAQGQLAAAEATYANAKIAAQRARSLA 128
           G++LKRL+ EGT+V EGQ L++IDP   +A L  A+ QLA A+AT  +A+  A R   L 
Sbjct: 102 GIILKRLFEEGTEVTEGQQLYQIDPATYKAALDSAKAQLAKADATVKSARAKAARYGELV 161

Query: 129 PQQYVSRADIDTAEATERSSGASVQQARGVVESASIQLSFASVTSPITGRAGIQRVTEGA 188
             + VSR D D   AT   S ASV  A+  V++A I L++  VT+PI+GR G   VTEGA
Sbjct: 162 KLKAVSRQDYDDVTATLAESVASVADAQATVDAAEINLAYTRVTAPISGRIGRSAVTEGA 221

Query: 189 LVGSGEATLLTTVDQIDPLYVNFAMSSEELAALRQAQSSGNVQLSGDGKSTINVELGNGT 248
           LV + +AT L T+ Q+DP+ V+   SS++L  LR   ++G VQ       T+ ++  +GT
Sbjct: 222 LVTANQATTLATITQLDPINVDLTQSSDKLLKLRAQMANGTVQAPERVPVTLQID-NSGT 280

Query: 249 QYPHPGTLDVSAVTVDPSTGAVSLRATLPNPEMALLPGAFVTFKASLGQRNNAYLVPQQA 308
            Y   GTL  S V VD +TG V LRAT PNP   LLPG FV      G R N +L+PQ+A
Sbjct: 281 PYGLTGTLQFSEVVVDETTGTVRLRATFPNPNRILLPGLFVRATVDFGSRENVFLIPQRA 340

Query: 309 LQRDATGAYAL-VLGKDGKVVRKNLTVDGQQKGQWIVTAGMAPGDQVIVDGVQKAKEGQP 367
           + RDA+G  AL V+G   K  R+ +T +  Q   W+VT G+  G+++++ G+Q    G  
Sbjct: 341 VVRDASGKAALWVIGDGDKAERRPVTAETTQGTNWVVTEGLKGGERIVIAGLQSMAPGAQ 400

Query: 368 AKGVPWDPNKPAQGGQPGAPGAAPAGGQAGTGQGAPA 404
            K V              AP A    GQ   GQ APA
Sbjct: 401 VKAV-------------AAPPAGQEAGQPAGGQPAPA 424