Pairwise Alignments

Query, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Xanthomonas campestris pv. campestris strain 8004

Subject, 844 a.a., preprotein translocase subunit SecD/SecF from Sinorhizobium meliloti 1021

 Score =  278 bits (711), Expect = 7e-79
 Identities = 178/510 (34%), Positives = 275/510 (53%), Gaps = 44/510 (8%)

Query: 127 PMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRSVERRGDNSIQVS 186
           P+ LGLDL GG H  ++VD     + RL    +D R  LR  R++  S    G NS+ VS
Sbjct: 43  PVTLGLDLRGGSHLVLEVDGAGLQKARLNSLLDDTRRVLRGERVSASSARISG-NSVTVS 101

Query: 187 LGEGASAD------------AARTALAKSQPTLTYDVSGQTISVKVPEAELKQIASGAIE 234
           + +    D             +    A   P +    +G  I++ + EA L    + A+E
Sbjct: 102 IPDAQDRDKVLPKLQELATPVSTVGFAAPAPEVEVTTAGDVITLAMTEAGLADRMTKAVE 161

Query: 235 QNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGN 294
           Q+L  +RNRV+ +GV+EP IQR G +RI+V+LPGLQD    + L+G+TA + F  + +  
Sbjct: 162 QSLEIIRNRVDQVGVAEPLIQRIGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQSV 221

Query: 295 --AEDAVRSGTIPPEAKVYRLRDSNA-PVLLNKRALVTGDQMVSASVSNDQN-GMPAVAV 350
              + A R   I P A      D N  PV    R  ++G+++  A V  DQ    P V  
Sbjct: 222 DVTQPAPRGVDILPGAN-----DGNRYPV--ESRVAISGERLDDAKVGFDQRTNQPVVDF 274

Query: 351 TLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVF 410
           + +++  ++  D T  NVG+  ++V          +DGK + +  + E  L         
Sbjct: 275 SFDSLGARQFADITRENVGRPFAIV----------LDGKVLTAPVINEPILG-------- 316

Query: 411 GKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVF 470
           G+   +      EA  L+ LL+SG+L AP+  +EE  +GP+LG++++  G+   +  F  
Sbjct: 317 GRGQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGSDSIRMGLFTGLAGFGL 376

Query: 471 TLVFFTVYYRMFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLI 530
            +V   V Y  +G I +V L+ + ++ I V+ L G+T+TLPG AG+ L +G++VDAN+LI
Sbjct: 377 VVVLMVVLYGAWGMIANVGLVLHTIMTIGVLGLIGSTLTLPGIAGIILGIGMAVDANILI 436

Query: 531 NERIREELRLGVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTMII 590
           N RIREE   G     A+  G+ KA  TI+D+N+T L   V L+ FG+GP+KGFA+TM++
Sbjct: 437 NARIREETEAGAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLFWFGSGPVKGFAVTMML 496

Query: 591 GIFASMFTAITVSRAL--AVLIYGSRKKLK 618
           GI  SMFT++TV R L   V++    KKL+
Sbjct: 497 GIGISMFTSVTVVRLLMREVVVRRKMKKLE 526