Pairwise Alignments

Query, 673 a.a., Excinuclease ABC subunit B from Xanthomonas campestris pv. campestris strain 8004

Subject, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

 Score =  927 bits (2395), Expect = 0.0
 Identities = 461/667 (69%), Positives = 555/667 (83%), Gaps = 6/667 (0%)

Query: 4   RFELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVM 63
           +FELV+ + PAGDQP AI +++   EAGL+ QTLLGVTGSGKT++IANV+  VQ+PTLV+
Sbjct: 3   KFELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVL 62

Query: 64  APNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMR 123
           APNKTLAAQLYGEFK+FFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKD+SIN+HIEQMR
Sbjct: 63  APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122

Query: 124 LSATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTR 183
           LSATK LL R D+++V TVS IYGLG P+ YL + L +  G+ +DQR+L+R LT LQYTR
Sbjct: 123 LSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYTR 182

Query: 184 NEFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTV 243
           N+ +  R  FRVRG+V+D+FPAESD EA+RIELFD ++E L+ FDPLTGE +RKL R+T 
Sbjct: 183 NDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFTF 242

Query: 244 YPKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFC 303
           YPK+HY T RE  L A++ IK+EL+ERL+ L SQNKLVEAQRL QRT+FDLEM+ E+G+C
Sbjct: 243 YPKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGYC 302

Query: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVE 363
           NGIENYSR+L+G+  GEPPPTLFDYLP DALLVIDESHV++PQ+GAMYKGDRSRKETLVE
Sbjct: 303 NGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVE 362

Query: 364 FGFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVV 423
           +GFRLPSALDNRP+RF+EWEA  P++I+VSATPGPYE  E AG + E VVRPTGL+DP +
Sbjct: 363 YGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYE-AEHAGRVVEQVVRPTGLVDPQI 421

Query: 424 EIRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTV 483
           E+RP  TQVDDL+SE+ + +   +RVLVTTLTKRMAE+LT+YL +H +RVRYLHSDIDTV
Sbjct: 422 EVRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDIDTV 481

Query: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAA 543
           ERVEIIRDLRLG FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 482 ERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 544 RNLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGARED 603
           RNL G+AILYAD +T SMQ A+DET+RRR KQ+ +N  +GI PK V + + DI+EGA   
Sbjct: 542 RNLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTKDVRDILEGATVP 601

Query: 604 AAEKKAGKGRSKSRQVAEEPADY--RAMGPAEIAGKLKALEQKMYQHAKDLEFEAAAQIR 661
            +  K  +G +K+   AEE A Y      P+EI  +++ LE+KM   A+DLEFEAAA+ R
Sbjct: 602 GSRSKKRRGEAKA---AEESARYENELRSPSEITKRIRQLEEKMLSLARDLEFEAAAEAR 658

Query: 662 DQILKLK 668
           D+I KL+
Sbjct: 659 DEIHKLR 665