Pairwise Alignments

Query, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  490 bits (1262), Expect = e-143
 Identities = 275/597 (46%), Positives = 368/597 (61%), Gaps = 44/597 (7%)

Query: 1   MTQESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT 60
           MTQE      FA LG+  AV+ A++AVGYE PSPIQ+  IP +L G D++GQAQTGTGKT
Sbjct: 1   MTQEIGG---FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKT 57

Query: 61  AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ 120
           AAFALP+LS  D  + + QAL+LAPTRELA+QVA AF+ Y++ +PG  V+ VYGG P   
Sbjct: 58  AAFALPILSKIDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGP 117

Query: 121 QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL 180
           QL A+++G  V+V TPGR++DHL R +  LS ++ LVLDEADEML++GF+DD+E + + +
Sbjct: 118 QLKAIRQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAM 177

Query: 181 PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT 240
           PE RQ  LFSAT+P +IR IA+ +L++P  + IAAKT T A I Q +  V    K+ A+ 
Sbjct: 178 PESRQTVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVL 237

Query: 241 RILEVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD 300
           R+LEVE FD +I F RTK AT +LA  L+A+G  AAA+NGD+ Q  RE+ I  LKDG+LD
Sbjct: 238 RLLEVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLD 297

Query: 301 ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML 360
           I+VATDVAARGLDV R++HV N D+PYD ESYVHRIGRTGRAGR G A+L VTPRE+ ML
Sbjct: 298 IVVATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357

Query: 361 RAIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP 420
           + IER T Q + E +LP+   V D R+ +    +   +A  +   + +LL +  ++    
Sbjct: 358 QVIERVTNQKVAEARLPNAQQVLDARIKKLTNSLAPLVADAEAT-HGELLDKLVADIGCS 416

Query: 421 AIDIAAAMAKLLQGDAPFLLTPPVRGAR--EDFAPRERNDRADRGERPRFEPKFERGPRA 478
              +AAA+ +         L    R        +PRER +R+DR ER             
Sbjct: 417 PRALAAALLRKATNGQALTLAEVEREQPLVPTSSPRERTERSDRPER------------- 463

Query: 479 PDGERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIV 538
                                  +R RR P  P  E   G    R  +G   G+   N++
Sbjct: 464 ---------------------SGDRERRAP-VPLAE---GRARCRTPLGARDGIAARNLL 498

Query: 539 GAIANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEE 595
           GAI NE GL    IGRI ++D +S+++LP D    LL  LK   V G+QL +R+  E
Sbjct: 499 GAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLGKLKDTRVGGKQLKLRRYRE 555