Pairwise Alignments

Query, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  473 bits (1218), Expect = e-138
 Identities = 267/639 (41%), Positives = 374/639 (58%), Gaps = 49/639 (7%)

Query: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
           F+DL L+ A++ A+  +G+ +P+PIQAA IP LL GRD LG+AQTGTGKTAAF+LP+L+ 
Sbjct: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87

Query: 71  ADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVH 130
            +L+Q KPQA+V+APTRELAIQVA   +   + I G +VL +YGG     Q+ ALK G H
Sbjct: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147

Query: 131 VVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFS 190
           +VVGTPGRV D + R  L L +  T +LDEADEML+MGF+DDV  ++++ PE  Q  LFS
Sbjct: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207

Query: 191 ATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDG 250
           ATMPP ++ I + +L++P  V +A    T A + Q+YW V G+ K +A+ R+LE E  D 
Sbjct: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267

Query: 251 MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310
            I+F RT+  TE LA  L ARG  AAA++GD+ Q+ RE+T+  +K G +DILVATDV AR
Sbjct: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327

Query: 311 GLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIERATRQP 370
           GLDV R++HV NYDIP+D ESY+HRIGRTGRAGR G AIL V   +  MLR IER TR  
Sbjct: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387

Query: 371 IEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVPAIDIAAAMAK 430
           +EE+QLP  D V ++R+ +    +        +E + DL+++ ++   + A  +AA + K
Sbjct: 388 MEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATTLAAILLK 447

Query: 431 LLQGDAP--FLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPDGERGARPP 488
             QG  P  ++   P+  A E    R R  R DR                 DG       
Sbjct: 448 RQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRR----------------DG------- 484

Query: 489 RPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGAIANEAGLE 548
             DRPA  E  G ++   +            ++Y+++VG   GV+  +IVGA+ANE GL 
Sbjct: 485 --DRPARREFGGRDQENHD-----------WDTYQLQVGRDQGVQVKDIVGALANELGLT 531

Query: 549 SRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQL-----NMRKLEEGEAAAAAA 603
              IG I +   ++ + LP  M  ++ + L+K+ +  +++     +     E    A   
Sbjct: 532 KGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLRIRQKEVGAVVCDFDDFRESRGGARRE 591

Query: 604 SKPKFPRGPRPAG------RPNRPMDRAGAPHRKGPPKP 636
             P+   G RP G      R  R   R G   R G  +P
Sbjct: 592 GGPRREGGRRPEGNREGGFRGGREGGREGGRGRGGEGRP 630