Pairwise Alignments

Query, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 644/1148 (56%), Positives = 837/1148 (72%), Gaps = 13/1148 (1%)

Query: 9    PPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLHALLGD 68
            PPLP +   + +   P +  AL+ +IA AA       L++  D+QSA +++ +L      
Sbjct: 7    PPLPAASGKQHWGNLPGA--ALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFF--- 61

Query: 69   ASALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLS 128
            A  LPV+ FPDWETLPYD FSPH +I+SQR++AL++LP L+ GV++VP+ T L +LAP  
Sbjct: 62   APGLPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKR 121

Query: 129  YIVGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADTPLR 188
            +++G S  L VGQ+LD++  + RLE+AGYR V  V + G+FAVRG L+D+FPMG+  P R
Sbjct: 122  FLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYR 181

Query: 189  IELLDEDIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRERFDVDTRR 248
            I+L D++I+++R FDPE+QRS+DKV+++++LP RE P+   +V    A  RERFDVD RR
Sbjct: 182  IDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRR 241

Query: 249  SALYQDLKSGIAPSGVEYYLPMFFSKTATLFDYL--DTRVLPLIATGVSNAADAFWLQAQ 306
              +YQDL +GI P+G+EYYLP+F+ +TATLFDYL  D++V  L   G+  AA+ FW   +
Sbjct: 242  CPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSL--PGIEQAAEQFWSDVR 299

Query: 307  NRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWPADHPRSDEAAPLGDQPLPP 366
            NRYE+RR D ERPLLPP EL+   +    RL    R+     D            Q LP 
Sbjct: 300  NRYEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPE 359

Query: 367  LPVAAKDAPAGQALASFLGHYPGRVLVAADSAGRREALMEVLAAAQLKPDVVADLPAFLA 426
            L + +K +     L  FL  YPGRVL  A+SAGRRE L+E+LA  +L+P  V     FLA
Sbjct: 360  LAIESKASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLA 419

Query: 427  ATKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRRTRRVGREPEAIIRDLGEL 486
            + + R  IT+APL++G  LD   +A++ E  LF +R  Q RR  +     E +I++L EL
Sbjct: 420  SDQ-RLAITIAPLDEGLQLD--DVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTEL 476

Query: 487  SEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISRYSGASA 546
             EG+P+VH DHGVGRY+GL  L+  G   EFL ++YA+  +LYVPVA LHLI+RY+G+  
Sbjct: 477  REGSPVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDD 536

Query: 547  DTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYEPFAAGF 606
              APLH LG E W KAKRKAAE+VRDVAAELL+I ARR AR G A +  +  YE FAAGF
Sbjct: 537  ALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGF 596

Query: 607  PFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVP 666
            PFEET DQ AAIDA   DL S++PMDR+VCGDVGFGKTEVA+RAAF A   G+QV VLVP
Sbjct: 597  PFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVP 656

Query: 667  TTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQPD 726
            TTLLA+QHY +FRDRFAD+P++VEV+SRFKS KE++  + ++A G ID++IGTH+LLQ D
Sbjct: 657  TTLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDD 716

Query: 727  VKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSIIA 786
            VKF +LGLV++DEE RFGVRQKE LKA+R+ V +LTLTATPIPRTLNM++AG+RDLSIIA
Sbjct: 717  VKFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIA 776

Query: 787  TPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSELVPEAR 846
            TPP  RL+V+TF+    NT+++EA  REL RGGQ+Y+LHNDV++I +   DL  LVPEAR
Sbjct: 777  TPPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEAR 836

Query: 847  IGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLH 906
            + I HGQM ER+LE+VM DF  +RFNVL+++TIIE+GID+P+ANTIII RAD+FGLAQLH
Sbjct: 837  VAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLH 896

Query: 907  QLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLEIRGAGE 966
            QLRGRVGRSHH+AYAYL+ P R++MT DA+KRLEAIA+  +LGAGF LATHDLEIRGAGE
Sbjct: 897  QLRGRVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGE 956

Query: 967  LLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGAEVELHVASLIPEDY 1026
            LLGE QSGQ+  VGF+LY E+LERAV++IR+G+ P+L+      G E+ L + +LIPEDY
Sbjct: 957  LLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQ-PLGGGPEINLRLPALIPEDY 1015

Query: 1027 LPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQANALGVR 1086
            LPDVH RL LYKRI++A D D L+ELQVEMIDRFGLLP+P K+L  +  LKLQA  LG+ 
Sbjct: 1016 LPDVHARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGIT 1075

Query: 1087 KLDLGENGGRLVFEAKPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAADRFKAAR 1146
            K+D G  GGR+ F A  S+DPM +I++IQ QPK Y  +G    + ++P+    +RF    
Sbjct: 1076 KIDAGPQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLE 1135

Query: 1147 GLLTALAP 1154
             LL  LAP
Sbjct: 1136 ALLERLAP 1143