Pairwise Alignments

Query, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  746 bits (1925), Expect = 0.0
 Identities = 449/1160 (38%), Positives = 655/1160 (56%), Gaps = 47/1160 (4%)

Query: 24   PSSPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLHALLGD-ASALPVVPFPDWET 82
            P    A A  +A  A A A PV  I  D Q      ADL  +LG  A  +PV+  P W+ 
Sbjct: 23   PVPTGAEALVLAELARAGA-PVAYILSDGQKV----ADLEQVLGFVAPDIPVLTLPGWDC 77

Query: 83   LPYDQFSPHPEIISQRLAALHRLPGLTR----GVVIVPVQTLLQQLAPLSYIVGGSFDLT 138
            LPYD+ SP  +  ++RLAAL  L    R     +V+V +   LQ+++P   I   +F   
Sbjct: 78   LPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQRISPQDVIESLAFTAR 137

Query: 139  VGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADTPLRIELLDEDIDS 198
             G ++ +D    RLE  G+  VP V + G+FAVRGG+LDV+  G+  PLR++   + +++
Sbjct: 138  PGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRLDFFGDTLEA 197

Query: 199  IRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRERFDVDTRRSALYQDLKSG 258
            IR+FDP SQR++ +V ++ + P  EV +   ++          F   TR  ALYQ +  G
Sbjct: 198  IRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRDDALYQAVSEG 257

Query: 259  IAPSGVEYYLPMFFSKTATLFDYLD-----TRVLPLIATG-----VSNAADAFWLQAQNR 308
               +G+E++LP+F+ +  T+FDYLD     T  L   A       V +  DA    A   
Sbjct: 258  RRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSKLVLDYYDARLASASPG 317

Query: 309  YEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWPADHPRSDEA------APLGDQ 362
              Q         +PPD LY +     E LN L  + + P      +        A  G +
Sbjct: 318  KSQVTQGTPYKPVPPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQGLR 377

Query: 363  PLPPLPVAAKDAPAGQALASFLGHYP------GRVLVAADSAGRREALMEVLAA---AQL 413
               P   A  D          + H         +V+V+  + G  + L++VLA    A +
Sbjct: 378  WAKPAGEADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRLLQVLAEHGLANI 437

Query: 414  KPDVVADLPAFLAATKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRRTRRVG 473
            +P  V  L    +         V  LE GF  +T  + V+ E+ +  +R  +  + R+ G
Sbjct: 438  RP--VKALSDIGSLKPGEAASAVLSLEAGF--ETGDLVVIGEQDILGDRLVRRSKRRKRG 493

Query: 474  REPEAIIRDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVA 533
             +    I ++  L EG+ +VH +HG+GR+ GL  ++A G P + LE+ YA   +L++PV 
Sbjct: 494  AD---FIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADDAKLFLPVE 550

Query: 534  QLHLISRYSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQ 593
             + L+SRY     D A L  LGG  W   K K  +++ D+A  L+ I A R  R    L 
Sbjct: 551  NIELLSRYGSEGTD-AVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLA 609

Query: 594  VDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFA 653
                +Y+ FAA FP++ET DQL +IDA   DLG  +PMDR+VCGDVGFGKTEVA+RAAF 
Sbjct: 610  AQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFI 669

Query: 654  AASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDI 713
            AA  G QVAV+VPTTLLA QH++ F DRF   P++++  SR   +K++    ++VA G  
Sbjct: 670  AAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKT 729

Query: 714  DVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLN 773
            D+++GTH LL   +KF +LGL+++DEEQ FGV+ KE LK ++ +VH+LTL+ATPIPRTL 
Sbjct: 730  DIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQ 789

Query: 774  MAMAGLRDLSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVR 833
            +A+ G+R+LS+I TPP +R+AV+TFI+ +D  ++RE   RE  RGGQ +++   V  +  
Sbjct: 790  LALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRVSDLPE 849

Query: 834  MQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTII 893
            +   L   VPE ++ +AHGQMP  ELE +M  F + R++VLLSTTI+ESG+D+P ANT+I
Sbjct: 850  IHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 909

Query: 894  INRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFT 953
            ++RAD FGLAQL+QLRGRVGRS  RA+A   +P  +++T  AE+RL+ + S+D LGAGF 
Sbjct: 910  VHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQ 969

Query: 954  LATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGAE 1013
            LA+HDL+IRGAG LLGE+QSG + EVGF LY ++LE AV  ++ G+    D G      +
Sbjct: 970  LASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELK-GEEEIHDTG---WSPQ 1025

Query: 1014 VELHVASLIPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDPVKHLFAI 1073
            + +    +IPE+Y+PD++ RL LY+R+    D   +     E+IDRFG LP  V+HL  I
Sbjct: 1026 ISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHLLKI 1085

Query: 1074 AELKLQANALGVRKLDLGENGGRLVFEAKPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKL 1133
              +K       V KLD G  G  + F  K   +P  ++  I KQ  +  +     +  + 
Sbjct: 1086 VYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIFFQR 1145

Query: 1134 PLPEAADRFKAARGLLTALA 1153
             L     R   A  ++T LA
Sbjct: 1146 ELATPEKRLSGAAMVMTQLA 1165