Pairwise Alignments

Query, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

Subject, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

 Score = 1147 bits (2966), Expect = 0.0
 Identities = 596/1166 (51%), Positives = 793/1166 (68%), Gaps = 26/1166 (2%)

Query: 3    SPTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEADL 62
            +P FPS P       R + +   S  ALA  I  +A AH G  LVI R    A ++E  +
Sbjct: 16   APEFPSRPADH----RTWGQLHGSSEALA--ICESARAHKGLTLVITRSTADAIRLEQAM 69

Query: 63   HALLG----------DASALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGV 112
               LG              L ++  PDWETLPYD FSPH +IIS+R+  LHRLP  + GV
Sbjct: 70   RFFLGLPPEEDGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGV 129

Query: 113  VIVPVQTLLQQLAPLSYIVGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVR 172
            ++VP +TL+ +L P++Y+ G +  L VGQ LD+++ + +LE+AGYR+   V + G++AVR
Sbjct: 130  LVVPARTLMHRLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVR 189

Query: 173  GGLLDVFPMGADTPLRIELLDEDIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVE 232
            G +LD+FPMGA  P RI+L D++I+++R FDPE+QRS+D+++ +++LP  E P    +  
Sbjct: 190  GAILDIFPMGASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARS 249

Query: 233  RVLACLRERFDVDTRRSALYQDLKSGIAPSGVEYYLPMFFSKTATLFDYLDTRVLPLIAT 292
               +   E+F    + + +YQD+  GI P G+EYYLP+FF +TATLFDYL        A 
Sbjct: 250  GFRSRWFEQFPDADKDTPIYQDVTHGITPPGIEYYLPLFFDETATLFDYLPGATHVFTAD 309

Query: 293  GVSNAADAFWLQAQNRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWPADHPR 352
            G+++A   F  + +NRYE RRHD  RP+LPP  L+   + L  +L    R+ V       
Sbjct: 310  GLNDAVSHFDSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTV----SAE 365

Query: 353  SDEAAPLGDQPLPPLPVAAKDA----PAGQALASFLGHYPGRVLVAADSAGRREALMEVL 408
            + +AA   + P   LP  A D     PAG+ L  FLG + G VL+ A+S+GRREALME L
Sbjct: 366  TKDAAGSVNCPTTTLPDIAMDGRAADPAGR-LKRFLGEFDGHVLICAESSGRREALMENL 424

Query: 409  AAAQLKPDVVADLPAFLAATKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRR 468
                ++   ++   AFL   +    IT+AP+E G  L    +A++TE  LF ER  Q RR
Sbjct: 425  GEQGVELKTLSGWQAFLDDKESSVAITIAPMEQGLVLPEHSVALITETALFGERVLQRRR 484

Query: 469  TRRVGREPEAIIRDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRL 528
              +     +A  RDL EL  GAP+VH DHGVGRY GL  +   G   EFL + YA G +L
Sbjct: 485  REKPTETDDAGFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKL 544

Query: 529  YVPVAQLHLISRYSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARA 588
            YVPV+ LHLISRY+G   + APLH LG ++W+ AK+KA EK+RD AAELL++ ARR AR 
Sbjct: 545  YVPVSSLHLISRYAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARK 604

Query: 589  GLALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAV 648
            G + +  +  Y  FAAGFPFEET DQ  AI +   D+ S QPMDR+VCGDVGFGKTEVA+
Sbjct: 605  GFSFEDPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAM 664

Query: 649  RAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKV 708
            RAAF A  +GKQVAVLVPTTLLA+QHY +FRDRF+D P++VE+LSRF++  +    LE V
Sbjct: 665  RAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAV 724

Query: 709  ASGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPI 768
             +G  D++IGTH+LLQ D+KFK+LGLV++DEE RFGV+QKE LKA+RA V +L LTATPI
Sbjct: 725  ENGRADIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPI 784

Query: 769  PRTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDV 828
            PRTLNMAM  LRDLSIIATPP  RL+V+TF+   DN +++EA  RE+ RGGQ+YFLHNDV
Sbjct: 785  PRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDV 844

Query: 829  ESIVRMQRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPN 888
             +I +   DL  L+PEAR+G+AHGQM ER+LE++M DF  +RFNVL+ TTIIE+GID+P+
Sbjct: 845  ATIEKTAEDLRSLIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPS 904

Query: 889  ANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDEL 948
            ANTIII RAD+FGLAQLHQLRGRVGRSHH+AYAYL+ P  +S+T+DA+KRL+AI+   +L
Sbjct: 905  ANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDL 964

Query: 949  GAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEE 1008
            GAGF LATHDLEIRGAGELLGE+QSGQ+  +GF+LY +LL+ AV++IR+G+ P+ D    
Sbjct: 965  GAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLS 1024

Query: 1009 VRGAEVELHVASLIPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDPVK 1068
              G E+ L + +LIPEDYLPDVH RL LYKRI+S    +AL+ELQVEMIDRFGLLPDP K
Sbjct: 1025 -HGTEMNLRIPALIPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAK 1083

Query: 1069 HLFAIAELKLQANALGVRKLDLGENGGRLVFEAKPSIDPMTVIQMIQKQPKIYTMDGPDK 1128
            +L    EL+L+A ALG+ K+D G+   RL F +   +DP+ +++ +Q  P  Y ++G + 
Sbjct: 1084 NLIRQTELRLRAEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANS 1143

Query: 1129 LRIKLPLPEAADRFKAARGLLTALAP 1154
             R +L       +      +L  L P
Sbjct: 1144 FRFRLKDATTGGKLDGISRMLGELEP 1169