Pairwise Alignments

Query, 239 a.a., Lipopolysaccharide ABC transporter, ATP-binding protein LptB from Xanthomonas campestris pv. campestris strain 8004

Subject, 243 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  298 bits (762), Expect = 9e-86
 Identities = 147/238 (61%), Positives = 185/238 (77%)

Query: 2   LVATGLRKKYKQREVVKEFGLTLEAGEVVGLLGPNGAGKTTCFYMIVGLVEADAGRIELD 61
           L A  L K YK R+VVK+  LT++ G+VVGLLGPNGAGKTT FYM+VGLV++D G I +D
Sbjct: 6   LKAQNLAKSYKSRQVVKDVSLTVKTGQVVGLLGPNGAGKTTTFYMVVGLVKSDKGHIFID 65

Query: 62  GRDLTAEPMYARAKLGVGYLPQEPSVFRKLSVADNIRLVLELRDDLDGPGQEKELASLLE 121
             DLTA+PM+ RA+ G+GYLPQE S+FRKL+V DNI  VL+ R +L+   +E+ L  LLE
Sbjct: 66  DDDLTADPMHLRARKGIGYLPQEASIFRKLTVHDNIMAVLQTRKELNSDQREEALEQLLE 125

Query: 122 ELQITHVADQLGASLSGGERRRCEIARALAAKPRMMLLDEPFAGVDPISVGEIQRIVIHL 181
           E  ITH+ D  G SLSGGERRR EIARALAA P+ +LLDEPFAGVDPISV +I++I+  L
Sbjct: 126 EFHITHIRDSQGMSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKKIIEQL 185

Query: 182 KERGIGVLITDHNVRETLGICDRAYILAEGGVLAQGAPDALLNNPDVRRVYLGDTFRL 239
           K RG+GVLITDHNVRETL +C+ AYI++ G ++A+G P  +L+N  VR VYLG+ FRL
Sbjct: 186 KSRGLGVLITDHNVRETLDVCEHAYIVSHGSLIAEGTPAEILDNQQVRAVYLGEQFRL 243