Pairwise Alignments

Query, 478 a.a., RNA polymerase sigma-54 factor RpoN from Xanthomonas campestris pv. campestris strain 8004

Subject, 502 a.a., RNA polymerase sigma-54 factor from Pseudomonas stutzeri RCH2

 Score =  369 bits (947), Expect = e-106
 Identities = 212/505 (41%), Positives = 309/505 (61%), Gaps = 32/505 (6%)

Query: 1   MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEW---------AD 51
           MK  L   +GQQL MTPQL+QAI+LLQ+ST +L+ EI EA+++NP+LE          +D
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLEREEDGDDFDSSD 60

Query: 52  EAAHAASEAPVEPSPSASNEERQRDEPAPAER---DDDWSQ------------DELQWTG 96
             A AA       +  +S++E   +EP+ +     D DW +            +++  T 
Sbjct: 61  PMAEAADRPGDTGTEKSSSQESTYEEPSHSGESADDGDWGERIPSELPVDTAWEDIYQTS 120

Query: 97  TGSGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLR 156
             S  S +DDD  D   R +   +L  HLLWQL+L+P+S  DR I   LID +++ GYL 
Sbjct: 121 ASSLPS-NDDDEWDFTSRTSNGISLQSHLLWQLNLAPMSDTDRLIATTLIDCINDQGYLE 179

Query: 157 EPLSAILETLNLG---NVDEAEVLTVLHQIQRFDPVGIGARSLGECLALQLQVLDAATPA 213
           E L  I+++ +      +DE EV  VL +IQ+F+P GIGAR L ECL LQL+ L   TP 
Sbjct: 180 ETLQEIVDSFDPELEIELDEVEV--VLRRIQQFEPAGIGARDLRECLLLQLRQLSERTPW 237

Query: 214 RELALQIVAGPLERLPRSGIAGLAHELKRSAADVEQAVQLVRSLDPRPGKQISALSQDTY 273
              A ++V+  L+ L     + L   +K    ++ Q ++L++SL+PRPG QI A S+  Y
Sbjct: 238 LSEAQRLVSDYLDILGSRDYSLLMRRMKLKEDELRQVIELIQSLNPRPGSQIEA-SEPEY 296

Query: 274 VVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYEQLIRSCGES-DAGYLRGQLQEARWLLK 332
           VVPD ++ +    W   L   A P++ ++  Y   ++    S D  ++R QLQEARW +K
Sbjct: 297 VVPDVIVRKHNDRWLVELNQEAMPRLRVNAQYAGFVKRADSSADNTFMRNQLQEARWFIK 356

Query: 333 SLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVR 392
           SL +R ETL++V   +++HQ  FLE G +A++PL L +IA  +G+HESTISR   +KY+ 
Sbjct: 357 SLLSRNETLMKVATQIVEHQRAFLEHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMH 416

Query: 393 TPRGTIPLRSFFASGIDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGV 452
           TPRG   L+ FF+S + T  GGE SSTAI+A+I++L+ AEN +KPLSD+K+A LL+  G+
Sbjct: 417 TPRGIYELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGI 476

Query: 453 PVARRTVAKYREAMNISASHERVRI 477
            VARRTVAKYRE++ I+ S ER R+
Sbjct: 477 QVARRTVAKYRESLGIAPSSERKRL 501