Pairwise Alignments

Query, 478 a.a., RNA polymerase sigma-54 factor RpoN from Xanthomonas campestris pv. campestris strain 8004

Subject, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

 Score =  375 bits (963), Expect = e-108
 Identities = 206/490 (42%), Positives = 303/490 (61%), Gaps = 17/490 (3%)

Query: 1   MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEA 60
           MK  LQ  LGQQL MTPQL+QAI+LLQ+ST +L+ EI EA+E+NPLLE  +    A S  
Sbjct: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60

Query: 61  PVEPSPSASNEERQRDEPAPAERDD-------------DWSQDELQWTGTGSGGSFDDDD 107
            V  +  +  E  +  EP P +  D             D + DE+    TGS G   DDD
Sbjct: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALDDD 120

Query: 108 NGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLSAILETLN 167
                 +   ++TL D+L WQL L+P S  DR I   LIDA+D+ GYL   L  I E+L 
Sbjct: 121 A--PIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLR 178

Query: 168 LGNVDEAEVLTVLHQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLER 227
             +++  E+  V  +IQ+FDP G+ + +L +CL LQL      TP  E A  +++  ++ 
Sbjct: 179 SDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238

Query: 228 LPRSGIAGLAHELKRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVW 287
           L       +  E K    D+ + +QL++ LDPRPG +I A     YV+PD  +++++G W
Sbjct: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRI-AQDHAEYVIPDVSVYKEQGRW 297

Query: 288 RAALAGRAQPKVTIHRGYEQLIRSCGESDAGYLRGQLQEARWLLKSLEARGETLLRVVRC 347
              +   + PK+ I++ Y  L+R    +++ Y+R  LQEA+WL+KSLE+R ETLL+V +C
Sbjct: 298 LVTINPDSVPKLKINQQYADLMRG-NNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKC 356

Query: 348 LLQHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRSFFASG 407
           +++HQ  F E+G +A++P+ L ++A  + +HESTISR   +KY+ TPRG   L+ FF+S 
Sbjct: 357 IVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSH 416

Query: 408 IDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMN 467
           + TD+GGE SSTAI+A+I++L+ AENP KPLSD+K+A LL   G+ VARRT+AKYRE++ 
Sbjct: 417 VSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLG 476

Query: 468 ISASHERVRI 477
           I+ S +R R+
Sbjct: 477 IAPSSQRKRL 486