Pairwise Alignments

Query, 478 a.a., RNA polymerase sigma-54 factor RpoN from Xanthomonas campestris pv. campestris strain 8004

Subject, 514 a.a., RNA polymerase factor sigma-54 from Sinorhizobium meliloti 1021

 Score =  242 bits (617), Expect = 2e-68
 Identities = 183/516 (35%), Positives = 255/516 (49%), Gaps = 55/516 (10%)

Query: 1   MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEW--ADEAA---- 54
           + A L     Q LVMTPQL Q+I+LLQM+  EL   IA+ VE NPLLE   ADE      
Sbjct: 3   LSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTISDR 62

Query: 55  ---------------HAASEAPVEPSPSASNEERQR------------DEPAPAERDDDW 87
                           AA ++ +  S  + + ER              D+ AP   D   
Sbjct: 63  EDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEGLDADFANVFPDDTAPQRAD--- 119

Query: 88  SQDEL--QWTGTGSGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAIL 145
              EL  QW      G   D +  D  + V   +TL + L  QL  +  +  DR I    
Sbjct: 120 -APELLGQWKSMPGAG---DAEGYDLDDFVGGRKTLRETLAEQLPFALSAVSDRLIARYF 175

Query: 146 IDALDEDGYLREPLSAILETLNLGNVDEAEVLTVLHQIQRFDPVGIGARSLGECLALQLQ 205
           ID LD+ GYL   L+   ETL     D A VL   H +Q+FDP G+ AR+LGECLA+QL+
Sbjct: 176 IDQLDDAGYLHADLAETAETLGAAGEDVARVL---HVLQQFDPPGVFARTLGECLAIQLR 232

Query: 206 VLDAATPARELALQIVAGPLERLPRSGIAGLAHELKRSAADVEQAVQLVRSLDPRPGKQI 265
             +   PA E     +   LE L R   A L         D+   +  +R LDP+PG   
Sbjct: 233 ARNRLDPAMEA----LVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSF 288

Query: 266 SALSQDTYVVPDCVIWRQR-GVWRAALAGRAQPKVTIHRGYEQLIRSCGESDAG---YLR 321
                +  ++PD V+     G W   L   A P+V ++  Y   I      ++G   +L 
Sbjct: 289 ETGVFEA-IIPDVVVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFLN 347

Query: 322 GQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGELGLHEST 381
             LQ A WL +SL+ R  T+++V   +++ Q  FL  G   LRPL LR +A  + +HEST
Sbjct: 348 ECLQNANWLTRSLDQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHEST 407

Query: 382 ISRAIARKYVRTPRGTIPLRSFFASGIDTDSGGEA-SSTAIQAMIRRLIDAENPRKPLSD 440
           +SR  + KY+ TPRG   L+ FF   I +   G+A S+ +++  IR +I+ E+    LSD
Sbjct: 408 VSRVTSNKYMLTPRGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLSD 467

Query: 441 AKLADLLKTSGVPVARRTVAKYREAMNISASHERVR 476
             + D+LK +GV +ARRTVAKYREAM+I +S +R R
Sbjct: 468 DDIVDVLKQAGVDIARRTVAKYREAMSIPSSVQRRR 503