Pairwise Alignments

Query, 478 a.a., RNA polymerase sigma-54 factor RpoN from Xanthomonas campestris pv. campestris strain 8004

Subject, 500 a.a., Sigma-54 (RpoN) (NCBI) from Rhodospirillum rubrum S1H

 Score =  275 bits (703), Expect = 3e-78
 Identities = 194/500 (38%), Positives = 270/500 (54%), Gaps = 37/500 (7%)

Query: 1   MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEA 60
           M  RL     Q LVMTPQL+QAIKLLQ+S  EL V + + +E NPLLE  D++A  + E 
Sbjct: 3   MSPRLDLRQTQSLVMTPQLQQAIKLLQLSNMELSVYVDQELERNPLLE-RDDSADVSPEP 61

Query: 61  PVEPSPSASNEERQRD------EPAPAERD-----------DDWSQ-----DELQWTGTG 98
                 + S E +  D        AP ++D           D W++     D     G+G
Sbjct: 62  DRREERADSAETQVLDVVPGNTTDAPLDQDFNTAAEEGTPSDSWAEAGGGFDAGTPWGSG 121

Query: 99  SGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREP 158
           + GSFDD D G   + VA   +L DHL  Q+ L   +  DR I   L+  LD+ GYL   
Sbjct: 122 TSGSFDDSDGG-LEQMVAGPRSLRDHLSDQITLDLKTSADRLIAHHLMGMLDDAGYLIGA 180

Query: 159 LSAILETLNLGNVDEAEVLTVLHQIQRFDPVGIGARSLGECLALQLQVLDAATPARELAL 218
           L  + ++L       AEV  VL ++Q  DP G+ ARSL ECLA+QL  L+   PA    +
Sbjct: 181 LDEVADSLGCSL---AEVERVLGRLQAMDPPGLFARSLKECLAIQLADLNRLDPA----M 233

Query: 219 QIVAGPLERLPRSGIAGLAHELKRSAADVEQAVQLVRSLDPRPGKQI-SALSQDTYVVPD 277
           Q +   LE L R  IAGL         D+   +  +R+LDP+P  +  + L+Q   V+PD
Sbjct: 234 QALLDHLEMLGRRDIAGLLKICGVDHEDMMGMIAEIRALDPKPALRFENTLTQP--VIPD 291

Query: 278 CVIWRQ-RGVWRAALAGRAQPKVTIHRGYE-QLIRSCGESDAGYLRGQLQEARWLLKSLE 335
            ++     G W   L     P+V I+  Y  +L RS  +    +L   L  A WL+KSL+
Sbjct: 292 VLMRPDPAGGWLVELNSETLPRVLINNRYHARLSRSGDKETRTFLSENLATANWLVKSLD 351

Query: 336 ARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPR 395
            R  T+L+V   L++ Q  F   G + LRPL LR+IA  + +HEST+SR  + KY+ +PR
Sbjct: 352 QRANTILKVATELVRQQDAFFLHGVRHLRPLILRDIAEAIEMHESTVSRVTSNKYIASPR 411

Query: 396 GTIPLRSFFASGIDTDSGGEA-SSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPV 454
           G   L+ FF   I    GGE+ S+ A++  IR LI+AE+P + LSD KL D+L+T G+ +
Sbjct: 412 GIFELKYFFTQAIGAADGGESHSAEAVRDRIRSLIEAESPDQVLSDDKLVDILRTDGIDI 471

Query: 455 ARRTVAKYREAMNISASHER 474
           ARRTVAKYRE M I++S  R
Sbjct: 472 ARRTVAKYREGMRIASSVRR 491