Pairwise Alignments

Query, 478 a.a., RNA polymerase sigma-54 factor RpoN from Xanthomonas campestris pv. campestris strain 8004

Subject, 508 a.a., RNA polymerase, sigma 54 subunit, RpoN from Marinobacter adhaerens HP15

 Score =  377 bits (969), Expect = e-109
 Identities = 218/510 (42%), Positives = 303/510 (59%), Gaps = 38/510 (7%)

Query: 1   MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADE-------- 52
           MKA LQ  LGQ L MTPQL+QAI+LLQ+ST +L+ EI +A+E+NP+LE +++        
Sbjct: 3   MKASLQLKLGQSLTMTPQLQQAIRLLQLSTLDLQQEIQQALESNPMLETSEDDDQTDTST 62

Query: 53  --------AAHAASEAPVEPSPSASNEERQRDEPAPAERDD--------DWSQDELQWTG 96
                   AA +A+E   EPS      E   D  +  E  D        D + D++  + 
Sbjct: 63  ESDEREANAAESAAETTPEPSSDWDESENGPDWSSENEIPDNIPDDLPVDTAWDDIYQSA 122

Query: 97  TGSGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLR 156
                  DD+++ D   R + +ETL DHL WQL+L+PLS RD+ I   L+DA+DE GYL 
Sbjct: 123 PAPAARNDDENDHDFETRNSPTETLQDHLEWQLNLTPLSERDQAIAHALMDAVDERGYLT 182

Query: 157 EPLSAILETLNLGNVDEAE--------VLTVLHQIQRFDPVGIGARSLGECLALQLQVLD 208
            PL    E ++ G +DE E        V  VLH++Q FDP G+ AR L ECL +QL  L 
Sbjct: 183 SPL----EEIHAGLLDENEEDPLELDEVEAVLHRLQHFDPPGVFARDLQECLLIQLNQLP 238

Query: 209 AATPARELALQIVAGPLERLPRSGIAGLAHELKRSAADVEQAVQLVRSLDPRPGKQISAL 268
             TP    A  ++   +  L     A L    +     + + + L+  L+PRPG  I   
Sbjct: 239 PDTPWLAQARLVITHYINLLGNRDYAQLLRRSRLKEDQLREVLALITGLNPRPGDVIDRA 298

Query: 269 SQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYEQLIRSCGES-DAGYLRGQLQEA 327
             D YV+PD ++ +  G WR  L     P++ ++  Y  LIR    S D  YLR QLQEA
Sbjct: 299 EPD-YVIPDVIVRKHNGRWRVELNPEIAPRIRVNASYASLIRRADSSADNTYLRDQLQEA 357

Query: 328 RWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIA 387
           +W +KSL++R ETLL+V   +++HQ GFL++G +A++PL L +IA  + +HESTISR   
Sbjct: 358 KWFIKSLQSRNETLLKVATRIVEHQQGFLDYGEEAMKPLILSDIAQAVEMHESTISRVTT 417

Query: 388 RKYVRTPRGTIPLRSFFASGIDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLL 447
           +KY+ TPRG   L+ FF+S + TD GGE SSTAI+AMI++LI AE P+KPLSD+K+A +L
Sbjct: 418 QKYMHTPRGIFELKYFFSSHVSTDEGGECSSTAIRAMIKKLIAAETPKKPLSDSKIAAML 477

Query: 448 KTSGVPVARRTVAKYREAMNISASHERVRI 477
              G+ VARRTVAKYREAM+I  S+ER R+
Sbjct: 478 GEQGIKVARRTVAKYREAMHIPPSNERKRL 507