Pairwise Alignments

Query, 415 a.a., Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) from Xanthomonas campestris pv. campestris strain 8004

Subject, 473 a.a., Restriction endonuclease S subunits from Pseudomonas stutzeri RCH2

 Score = 53.9 bits (128), Expect = 1e-11
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 6   WRRTTLGNIGSVKSGSTPARSQHDRYFVDGKWPWVKTMDLTNSEILTTDEVITDAALAES 65
           W    LG++ +  SG TP ++    +  +G  PW+    +  S    +   IT++ L+  
Sbjct: 5   WLEVPLGSVTTWLSGGTPNKATTSYW--NGDIPWISANSMYGSRFYDSGLRITESGLSAG 62

Query: 66  SCRLFPAGTVLVAMYGG-FKQIGRTGLLREKSAINQAISAIDIERNQADPEFVLHWLNGS 124
           S RL PA +V++ + GG        G+     A NQ + A+  + ++ DP F+L+WL G+
Sbjct: 63  S-RLAPAYSVMLLVRGGALHNRLPVGMACRNLAFNQDVKALIADPSKLDPWFLLYWLIGN 121

Query: 125 VETWKNYAASSR--KDPNITRENVCDFPVILPTLGEQRRIAHILSTWD 170
                N            +  + +   P+ LP +  Q+ IA I  + D
Sbjct: 122 ERFLLNEVVEETGIGAGKLDTKRMQALPMQLPPMHLQKAIAQIARSID 169