Pairwise Alignments

Query, 415 a.a., Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) from Xanthomonas campestris pv. campestris strain 8004

Subject, 424 a.a., specificity protein S from Sinorhizobium meliloti 1021

 Score = 50.1 bits (118), Expect = 1e-10
 Identities = 89/432 (20%), Positives = 169/432 (39%), Gaps = 35/432 (8%)

Query: 6   WRRTTLGNI-----GSVKSGSTPARSQHDRYFVDGKWPWVKTMDLTNSEILTTDEVITDA 60
           W  TTLG +     G +K+G   ++     Y  DG  P V   D+    +    E     
Sbjct: 4   WTETTLGQLCDDGGGEIKTGPFGSQLHQSDYSSDGT-PVVMPKDILEGRL---SEFSVAR 59

Query: 61  ALAESSCRL----FPAGTVLVAMYGGFKQIGRTGLLREKSA---INQAISAIDIERNQAD 113
             +E   RL      +G ++   YG    IGR  L+ E+            I + +   +
Sbjct: 60  VGSEHVQRLAQHQLQSGDIV---YGRRGDIGRCALITERETGWLCGTGCLRISLGQGAIE 116

Query: 114 PEFVLHWL-NGSVETWKNYAASSRKDPNITRENVCDFPVILPTLGEQRRIAHILSTWDQA 172
           P+F+ ++L N    +W    A     PN+    +    V  P +  QRRIA ILS +D  
Sbjct: 117 PKFLFYFLINPVTVSWIYNQAVGATMPNLNTGILRSITVRYPDILTQRRIAGILSAYDDL 176

Query: 173 IATTERLLKNSQKQMDILLRDLTLGTQRTTSTPSPWAKFTLGELGRTYSGLSGKKGEDFG 232
           I   +R +   +     L  +  +  +       P  +  LG +   ++  + ++  D  
Sbjct: 177 IEVNQRRIAILEDMARRLFDEWFVRFRYPGHEAVPLVETELGMVPVGWTPGTFRECVDVN 236

Query: 233 -------FGAKFIPYTNVFKNNRIDIEDFSLVKISENENQTR--VKSGDIIFTISSETPN 283
                       I Y ++   +   ++  + +K SE   + R  +++GD+I+  S+  PN
Sbjct: 237 PETLSPRKAPAHIHYIDIASVSVGRVDAVTTMKFSEAPGRARRVIRNGDVIW--STVRPN 294

Query: 284 EVGMASVLLDDVNELYLNSFCFGYRLNDFKTLLPEYAGFVLRAPHIRALMTQIAQGSTRF 343
               A +LLD  ++   ++   G+     +     +     R       +   A+GS   
Sbjct: 295 RRSHA-LLLDVASDTVAST---GFAALRSRNSDWAWVYEATRTDAFVGFLVGRARGSAYP 350

Query: 344 NISKANVMRMELALPSIAEQKRIASILGGAHSTVKNLRDQLARLKAEKVILMSQLLTGKR 403
            +  A+   + L +P +  +      +G  H     L  Q  +L+A + +L+ +L++G+ 
Sbjct: 351 AVVGADFEDVPLIVPPLDLRSTFQIQVGPMHELASTLHRQNNKLRAARDLLLPKLISGEI 410

Query: 404 RVRLPTDEAAHA 415
            V +  +  A A
Sbjct: 411 DVSVAEETFAEA 422