Pairwise Alignments

Query, 313 a.a., Ku domain protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 272 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  111 bits (277), Expect = 2e-29
 Identities = 78/264 (29%), Positives = 127/264 (48%), Gaps = 8/264 (3%)

Query: 3   RPIWTGTLSFGLLNVPVSLMSGERKVD-LHFRMLDSRDKKPIRFERVNADTGDEVPWKEI 61
           RP W G L   L+  PVS+M    + + + F  L+ +    +    V+A TG EV   + 
Sbjct: 5   RPYWKGYLKLSLVTCPVSMMPATSESEKVRFHTLNRKSNNRVVSRYVDAVTGKEVDEDDE 64

Query: 62  VKAFEYDKGSYVIVEEQDIRSAAPESHETVEVETFVDAADIDPRYFEKPYILVPGKK-AE 120
           VK +E  +  ++++E++++ S A ES  T+++E FV    I+  + EKP+ L P  +   
Sbjct: 65  VKGYERGENDFLVIEDEELESVALESARTIDIEKFVPRDTIEWIWLEKPHYLTPSDEVGH 124

Query: 121 KGYVLLRETMRDTGKVGIAKVVIRTREYLAAVMPQGDALILLLLRYQQEVVDPEDFKLPS 180
           + + ++R+ M      GI+++VI  RE    + P G  +++  LRY  EV  PE++    
Sbjct: 125 EAFSVIRDAMVAEKVAGISRLVIGRRERAVMLEPCGKGIVVWTLRYGDEVRKPENYFADI 184

Query: 181 GAVSEYRITAKEQEMAKQLIESMSGRWQPEDYHDEFRGKLEQILR-KRIQAKGGTTQVDD 239
           G         K   +   LIE  S  W P    D  + KL +I+  KR  AK        
Sbjct: 185 GDGDN---DPKLMSLVTSLIEERSKPWNPNMVSDPVQEKLLEIIESKRKSAKKVAKPKAK 241

Query: 240 EPAPHEDATTNVVDFMSLLQKSLQ 263
           E  P      NV+D M+ L+ SL+
Sbjct: 242 EGEPVH--AGNVIDLMAALKGSLE 263