Pairwise Alignments

Query, 313 a.a., Ku domain protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 294 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  121 bits (304), Expect = 2e-32
 Identities = 89/313 (28%), Positives = 150/313 (47%), Gaps = 26/313 (8%)

Query: 2   ARPIWTGTLSFGLLNVPVSLMSGERKVD-LHFRMLDSRDKKPIRFERVNADTGDEVPWKE 60
           AR  W G L FG +  PV+L +     D + F  ++      +R E +++ +G  V  ++
Sbjct: 5   ARAQWKGYLRFGEVTAPVALYTATSTSDRIAFHTVNRETGNRVRREFIDSVSGKPVEKED 64

Query: 61  IVKAFEYDKGSYVIVEEQDIRSAAPESHETVEVETFVDAADIDPRYFEKPYILVPGKKAE 120
            VK +E     YV++E +++ SA PES +T+ V+ F+   +++  YF+KPY L P K   
Sbjct: 65  QVKGYEIGDERYVVLEPEEVASAVPESDKTLRVQAFIPCDEVEKVYFDKPYYLTPDKMGT 124

Query: 121 KGYVLLRETMRDTGKVGIAKVVIRTREYLAAVMPQGDALILLLLRYQQEVVD-PEDFKLP 179
             + LLRE MR      IA+ V+  R     + P    LI   L +  EV    E FK  
Sbjct: 125 DAFALLREGMRKKKVAAIAQTVLFRRMRTILLRPHDKGLIATTLNFDYEVRSAKEAFK-- 182

Query: 180 SGAVSEYRITAKEQEMAKQLIESMSGRWQPEDYHDEFRGKLEQILRKRIQAKGGTTQVDD 239
              + + +I  +  ++AK +I    G +  E++ D +   L  +++ +++ K    +   
Sbjct: 183 --EIPDIKIEGEMLDLAKHIIGMKKGTFSAEEFDDRYEAALADLIKAKLEGKSLPKR--- 237

Query: 240 EPAPHEDATTNVVDFMSLLQKSLQANTRTPAKKTTAAADTAPAKKTATKKAAKKATKKTA 299
             AP + +  N  D +  L++S  A  + P          A +KK A K++A K   KTA
Sbjct: 238 --APPKVSKAN--DLLEALRQS--AGMKKP---------PAASKKRAGKESAAKTKAKTA 282

Query: 300 TKATKKAAPRRKA 312
            K+    A RR+A
Sbjct: 283 AKSA--PAQRRRA 293