Pairwise Alignments

Query, 331 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  335 bits (858), Expect = 1e-96
 Identities = 166/306 (54%), Positives = 214/306 (69%), Gaps = 1/306 (0%)

Query: 18  VPDSAAGRRFDAVLAELFPEFSRSRLSEWIKSGDALLDGET-ARPRDTLRGGETVQVQVV 76
           V DS  G+R D  +AELF +FSRSRL EW+  G   ++G+   +PR  + GGE + VQ  
Sbjct: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAE 70

Query: 77  LETQTHAAPQDIPLNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAVP 136
           LE +     QD+PLN++YEDD ++VI+KP   VVHPGAG  D T++NALLF    +A VP
Sbjct: 71  LEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVP 130

Query: 137 RAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGALVSGGTADAPID 196
           RAG+VHRLDKDT+G+MVVA+T+ AQT LV  L  RDV R+Y A+V+G + +GG  D PI 
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGMIDKPIG 190

Query: 197 RHPRDRLKMAVRDDGRDAVTHYRLRERFRAHTALECRLETGRTHQIRVHMAHLKSPIVGD 256
           RH   R  M+V   G+ AVTHYR+ E FR HT L  RLETGRTHQIRVHMA+L+ P++GD
Sbjct: 191 RHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGD 250

Query: 257 PLYGGALKLPKGATDTLVAELRGFKRQALHAETLEFLHPVSGEPIRASAPVPEDLQRLMS 316
             YGG  ++PKGAT+ L   +R F RQALHA  L+F HPV+GE +   APVP+D+  +  
Sbjct: 251 TAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPDDMVEMTL 310

Query: 317 ALREDS 322
           ALRED+
Sbjct: 311 ALREDA 316