Pairwise Alignments

Query, 331 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

Subject, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  218 bits (555), Expect = 2e-61
 Identities = 131/310 (42%), Positives = 183/310 (59%), Gaps = 9/310 (2%)

Query: 15  QAVVPDSAAGRRFDAVLAELFPEFSRSRLSEWIKSGDALLDGET-ARPRDTLRGGETVQV 73
           +  V   AAG+R D  LA + P  SR+RL + I      ++G+T       ++ G+TV+V
Sbjct: 26  ERAVDAEAAGQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRVKPGQTVRV 85

Query: 74  QVVLETQTHAAPQDIPLNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFR-DPNL 132
           +          P+ I L V+YEDD ++VIDK AG+VVHPG GNPD TLVNALL    P+L
Sbjct: 86  EEPPPIAATPQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLAHCGPSL 145

Query: 133 AAV---PRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVG-ALVSG 188
           + +    R G+VHRLDKDTSG+M+ A+T  A   L EQ +   + R+YL +V G    + 
Sbjct: 146 SGIGGERRPGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSLTREYLCLVWGRPRPAA 205

Query: 189 GTADAPIDRHPRDRLKMA-VRDDGRDAVTHYRLRERFRAHTAL-ECRLETGRTHQIRVHM 246
           G+ DAP+ RHP  R KMA V   G+ A+THYR+        ++ +C L TGRTHQ+RVHM
Sbjct: 206 GSIDAPLGRHPTQRKKMAVVSRGGKRALTHYRVVGDVEGIASIVKCTLSTGRTHQVRVHM 265

Query: 247 AHLKSPIVGDPLYGGALKLPKGATDTLVAELRGFKRQALHAETLEFLHPVSGEPIRASAP 306
           AH+  P++GD +YG    +PK     L   +    RQALH+  L FLHP +GE +   + 
Sbjct: 266 AHIGHPLLGDAVYGHR-NIPKKLPGDLSERIARLTRQALHSFHLGFLHPRTGESLEFLSE 324

Query: 307 VPEDLQRLMS 316
           +P D+  + S
Sbjct: 325 LPLDISAVAS 334