Pairwise Alignments

Query, 346 a.a., Permease from Xanthomonas campestris pv. campestris strain 8004

Subject, 368 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 88/338 (26%), Positives = 157/338 (46%), Gaps = 31/338 (9%)

Query: 2   PSSDLRAFVVRVVIVLALVAYAWLLWALSGLLLMVFGAVVVAVLLRALASWVTRYTPLSD 61
           P++  + F V   +V+ L      + A S +++    +  +AV+       +T+Y     
Sbjct: 7   PTAAYKGFAVMAFVVIILAG----IKAASPIVVPFVLSCFIAVICNPAIGLMTKYRVPKW 62

Query: 62  GMALGLVVVVVAVGFTALLWLFGSQLATELGALQRTLPQAWARFHD---WVAAGPLGPAL 118
              + L+  +V +G    LWL  S + + +    + LPQ   +  +   WV        L
Sbjct: 63  LAVILLMCFIVLMG----LWL-ASLVGSSINEFSKQLPQYRNQLVEQFSWVLH-----KL 112

Query: 119 EELTRQAPARVSNLAPRAGAFALSITGGV--------ANLFLVLAGAVYLAAQPQ-LYRR 169
           + L  Q  ++   LA      ALS+T  +        ANLFL++   V++  +   L ++
Sbjct: 113 QALNIQI-SKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEASSLPKK 171

Query: 170 GVLLLFPVQVRATMDDAVRASGTALRLWLRGQLLAMVVVGALTGLGLWALGIPGALALGI 229
             L L    +R    D    S   +  ++  + L  +  G + G+GL  +G+  AL   +
Sbjct: 172 LHLALDDPDMRLQQIDRFLQS---VNQYMVIKTLVSLATGLIVGVGLAFIGVDYALLWAV 228

Query: 230 IAGLLDFVPIVGPILAAIPAILLGF-TVSPQMALATAALFVVVQQIEGNILLPLIQQRTV 288
           IA L +++P +G I+AAIPA+LL F  + P  A  T  L++    + GN++ P    R +
Sbjct: 229 IAFLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTTMLYIGANMVMGNVVEPKFMGRGL 288

Query: 289 DLPPVLLLFSLFGIGTLLGPAGVLLAAPLTVVAFVLVK 326
            L  +++  SL   G LLG  G+LL+ PLT+V  + ++
Sbjct: 289 GLSTLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326