Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  160 bits (404), Expect = 6e-44
 Identities = 95/353 (26%), Positives = 181/353 (51%), Gaps = 19/353 (5%)

Query: 8   LVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKL 67
           LV + +  +  V A  T+++Y W  Y+ E +L  FE+  G+   Y  F++NE++  KL L
Sbjct: 12  LVGAGLTLAVSVQAASTVHIYNWSDYIGETTLADFEKATGIKPVYDVFDSNETLEGKL-L 70

Query: 68  LKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HDPQNKFSLPY 125
              TGYDVV  S +F+ K  + G   ++D  Q+PN  +  P +L     +DP N++++PY
Sbjct: 71  AGRTGYDVVVPSNHFLGKQIKAGAFQKLDKAQLPNYANLDPVLLKRLEKNDPGNQYAVPY 130

Query: 126 IWGITGLYYNSSTLP-----NGITKWADLWDKQYEQQ-----VMLIDDIRDVFGMALKLN 175
           +WG  G+ YN   +      + I  WA L++ +  ++     V  +D   ++    L   
Sbjct: 131 LWGTNGIGYNVEKIKAVLGVDKIDSWAMLFEPENIKKLSNCGVSFLDSGDEMIPAMLNYL 190

Query: 176 GFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEM 235
           G + N+++ E+ KKA   L+ ++  V  +NS        +GE  +   ++G+ +Q +   
Sbjct: 191 GLNPNSEDPEDYKKAEAQLLKIRPYVTYFNSSKYISDLANGEICVAAGFSGDIFQARERA 250

Query: 236 PE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYA 289
            E      + +V+P+EG  LW D   IP  + N+  AH FIN++ +PE  A++  ++GYA
Sbjct: 251 SEAGKGVEIAYVIPKEGGNLWFDMLAIPRDATNVKQAHAFINYVLKPEVIAQVSDTVGYA 310

Query: 290 SATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLRN 342
           +       L+  ++R +  ++P    + K    +++ P+   +  + W ++++
Sbjct: 311 NPNPKAGELMDQKVRTDEAVYPPQAVVDKLYVNSELPPKIQRLMTRSWTKVKS 363