Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  148 bits (374), Expect = 2e-40
 Identities = 94/362 (25%), Positives = 179/362 (49%), Gaps = 21/362 (5%)

Query: 1   MKTFIKGLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEG-VTINYSTFENNE 59
           +K F+   V +A++  +    E+TL VY W  Y+  K+L+ F+ Q   V + Y  F+ NE
Sbjct: 4   LKRFMAPAVCAALLCGAVQAEERTLRVYNWFDYITPKALEDFKAQNSQVKLVYDIFDTNE 63

Query: 60  SMYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGL--AHDP 117
           ++  KL L   +GYDVV  S  F+ K    G+   +D +++PN     P ++ L  A+DP
Sbjct: 64  ALEAKL-LTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWNHLDPKLMKLIEANDP 122

Query: 118 QNKFSLPYIWGITGLYYNSSTLPNGITKWA--DLWDKQYEQQ---------VMLIDDIRD 166
            NKF++PY++G   + +N   +   +   A  D WD  ++++         V L+D   +
Sbjct: 123 GNKFAVPYMYGTILIGFNPDKVKAALGDNAPVDSWDLIFKEENISKLKQCGVALLDSPSE 182

Query: 167 VFGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNG 226
           +  +AL+  G   N+K   +  KA   ++ ++ ++  ++S        +G+  + + ++G
Sbjct: 183 ILPLALQHLGLDPNSKKPADYAKAEALMMKIRPHITYFHSSKYMADIANGDICVAVGYSG 242

Query: 227 NAYQGQVEMPELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQA 280
           +  Q      E K        +P+EGA +W D   IP G+ N   A+ FIN++ QP+  A
Sbjct: 243 SFSQAANRAKEAKNGVTVDMRLPKEGAPIWFDMLAIPKGAANPGDAYAFINYLLQPQVIA 302

Query: 281 EIVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRL 340
            +   +GY +  K    ++   +R+NP ++P++  M     +  +  +      + W R+
Sbjct: 303 PVSDFVGYPNPNKDATDMVDPAIRNNPNLYPTEAAMTTLYTLQPLPRDAERARTRAWTRI 362

Query: 341 RN 342
           ++
Sbjct: 363 KS 364