Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Probable periplasmic spermidine/putrescine-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score =  141 bits (355), Expect = 3e-38
 Identities = 87/330 (26%), Positives = 160/330 (48%), Gaps = 20/330 (6%)

Query: 1   MKTFIKGLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNES 60
           ++T     +L A +++S    E  + +Y W G L  ++ K FEQ+ G  ++   F++ E 
Sbjct: 6   LRTIFSASLLCAGISTSVAAVEPGMYLYNWFGLLAPETPKEFEQETGTRVHMDAFDSAEI 65

Query: 61  MYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLG--LAHDPQ 118
           M +K+ +   TGYDVV A++  +  + R G+L  +D +Q+ N     P +L     +DP 
Sbjct: 66  MQSKV-MAGRTGYDVVVATSNVLPSLIRAGVLQPLDRSQLSNFSHIDPDLLSQLAVNDPG 124

Query: 119 NKFSLPYIWGITGLYYNSSTLPNGITKWADL--WDKQYEQQ---------VMLIDDIRDV 167
           N++++PY+WG TG+ Y+   +   +   A +  WD  ++++         V ++D   ++
Sbjct: 125 NRYAVPYLWGTTGIGYDVDKVRGALGDNAPVNSWDLIFKEENISKLQSCGVAMLDSPSEI 184

Query: 168 FGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGN 227
             +AL   G   N+KN ++ +KA   L+ ++  VL ++S         G     + W   
Sbjct: 185 ISIALNYLGLPSNSKNPDDYQKAQALLLKIRPYVLYFDSSKIDADLADGNICAVVGWANG 244

Query: 228 AYQGQVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAE 281
           A   Q    +      + + +P EGA+ W +N  +   + +      FIN+M +PE  A+
Sbjct: 245 ALAAQAINEKANTGRKIAYSLPREGALSWSENLVLLKDAPHPKEGMAFINYMMRPEVIAK 304

Query: 282 IVQSLGYASATKGGRALLPAELRDNPTIFP 311
                 Y +A K     +  +LRDNP I+P
Sbjct: 305 TSNHTLYPNANKDAAEFVERKLRDNPWIYP 334