Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  154 bits (389), Expect = 3e-42
 Identities = 92/361 (25%), Positives = 178/361 (49%), Gaps = 21/361 (5%)

Query: 1   MKTFIKGLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNES 60
           ++  + G V+S +V+ + +  E+T+ +Y W  YLP + LK+FE++ G+   Y  F++ E+
Sbjct: 5   LRNTLLGAVVSMLVSGASLAEERTVRIYNWIEYLPPEILKSFEEETGIRPIYDVFDSVET 64

Query: 61  MYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPT---VLGLAHDP 117
           + +KL L   +GYDVV+ S+  +  +   G +  +D +Q+PN +   P     L    D 
Sbjct: 65  LESKL-LTGNSGYDVVYPSSSNVSHLIAAGAVQPLDRSQLPNWQHLDPEFMKTLEAIGDE 123

Query: 118 QNKFSLPYIWGITGLYYNSSTLPN--GITKWADLWDKQYEQQVM---------LIDDIRD 166
            N+++ PY+WG T + YN   +    G     + WD  ++++ M          +D   +
Sbjct: 124 GNRYAAPYLWGTTLIGYNVDKVRQVLGADVQMNTWDIIFKEENMAKLASCGVGFLDAANE 183

Query: 167 VFGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNG 226
           +  +AL   G   N++  E+  +A  ++  ++  +  +NS    +   +GE  +G+ W+G
Sbjct: 184 IVPIALHYKGLDPNSQKREDYPQAQAAMHTVRPYITYFNSSRYGMDLANGEICVGVGWSG 243

Query: 227 NAY------QGQVEMPELKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQA 280
                        +  ++   +P+EGA +W D   +P+ + +   A+ FIN++ +P+  A
Sbjct: 244 GVALATRLADAAGKGVKVAMALPKEGAPMWADVMMVPTNAPHTAEAYAFINYILRPDVIA 303

Query: 281 EIVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRL 340
            I   +GY +  K   AL+ AE+R NP ++  DE  K    +  V      I  + W  +
Sbjct: 304 RISNKIGYPNPNKDATALVDAEIRSNPAMYIPDEARKTLFMLEPVPAAVERIRTRTWTAI 363

Query: 341 R 341
           +
Sbjct: 364 K 364