Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N1B4

 Score =  166 bits (419), Expect = 1e-45
 Identities = 96/354 (27%), Positives = 179/354 (50%), Gaps = 21/354 (5%)

Query: 8   LVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKL 67
           LV + +  +  V A  T+++Y W  Y+ E +L  F+++ G+   Y  F++NE++  KL L
Sbjct: 12  LVGAGLTLAVSVQAAGTVHIYNWSDYIGETTLADFQKETGIKPVYDVFDSNETLEGKL-L 70

Query: 68  LKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HDPQNKFSLPY 125
              TGYDVV  S +F+ K  + G   ++D +++ N  +  P +L     +DP N++++PY
Sbjct: 71  AGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSKLTNYSNLDPVLLKRLEQNDPGNQYAVPY 130

Query: 126 IWGITGLYYNSSTLPN--GITKWADLWDKQYEQQ---------VMLIDDIRDVFGMALKL 174
           +WG  G+ YN   +    G+ K  D WD  +E Q         V  +D   ++    L  
Sbjct: 131 LWGTNGIGYNVDKVKAVLGLDK-IDSWDVVFEPQNIKKLHSCGVAFLDSADEMMPTVLNY 189

Query: 175 NGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVE 234
            G   N+ N E+ KKA   L+A++  V  ++S        +G+  + + ++G+ +Q +  
Sbjct: 190 MGLDANSTNPEDYKKAEAKLLAVRPYVTYFHSSKYIADLANGDICVAIGFSGDMFQAKAR 249

Query: 235 MPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGY 288
             E      + + +P+EG  LW D   IP  + N+  AH FIN++ +PE  A++  S+GY
Sbjct: 250 AAEAGKGMNIAYSIPKEGGALWFDMLAIPKDAANVKEAHAFINYLLKPEVIAQVSNSVGY 309

Query: 289 ASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLRN 342
           A+   G   L+   +R + +++P    + K     ++ P    +  + W ++++
Sbjct: 310 ANPNPGSDKLMEQSIRTDASVYPPQAVLDKTYVSIELPPNIQRLMTRSWTKVKS 363