Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  157 bits (397), Expect = 4e-43
 Identities = 96/364 (26%), Positives = 183/364 (50%), Gaps = 23/364 (6%)

Query: 1   MKTFIKGLV---LSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFEN 57
           M  F K L+   L+  VA +    E+ L+VY W  Y+ E +L+ F ++ G+ + Y  F++
Sbjct: 1   MNPFAKTLLAMTLAGTVAGAAQAQEKVLHVYNWSDYIAEDTLENFTKETGIKVVYDVFDS 60

Query: 58  NESMYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAH-- 115
           NE +  KL L   +GYDVV  S  F+ K  + G+  ++D +++PN ++    +L      
Sbjct: 61  NEVLEAKL-LAGSSGYDVVVPSNPFLAKQIKAGVFQKLDKSKLPNWENLDKDLLKALEPS 119

Query: 116 DPQNKFSLPYIWGITGLYYNSSTLPN--GITKWADLWDKQYEQQ---------VMLIDDI 164
           DP N++S+PY+WG  G+ YN   +    G     D WD  ++ +         V  +D  
Sbjct: 120 DPGNQYSIPYMWGTIGIGYNVDKVKAVLGDNAPVDSWDLVFKPENIEKLKSCGVAFLDSP 179

Query: 165 RDVFGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQW 224
            ++   AL   G++ ++   +E+KKA +  + ++ +V  ++S        +G   + + +
Sbjct: 180 TEMLPAALHYLGYAPDSGKADELKKAEDLFMQIRPHVAYFHSSKYISDLANGNICVAIGY 239

Query: 225 NGNAYQGQVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPEN 278
           +G+ YQG+    E      + + +P+EGA  + D   +P+ +KN+  AH FIN++ +P+ 
Sbjct: 240 SGDIYQGKSRAEEAANGVNVGYKIPKEGAGSFFDMLAVPADAKNVESAHAFINYLMKPDV 299

Query: 279 QAEIVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQ 338
            A I   + + +       LL   +R +  I+PS   ++K     D+ P+T     + W 
Sbjct: 300 MASITNYVQFPNGNAAATPLLDEAIRTDEGIYPSQAVLQKLYTFPDLDPKTQRAMTRSWT 359

Query: 339 RLRN 342
           ++++
Sbjct: 360 KIKS 363