Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  159 bits (401), Expect = 1e-43
 Identities = 91/360 (25%), Positives = 180/360 (50%), Gaps = 19/360 (5%)

Query: 1   MKTFIKGLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNES 60
           M++ +K L+++A +  +      ++++Y W  Y+ E +L+ FE++ G+   Y  F++NE+
Sbjct: 1   MRSTLKSLLVAAAMTGAATAQAASVHIYNWSDYIGETTLEEFEKETGIKPVYDVFDSNET 60

Query: 61  MYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HDPQ 118
           +  KL L   +GYDVV  S +F+ K  R G    +D +++PN +   P +L     +DP 
Sbjct: 61  LEGKL-LAGRSGYDVVVPSNHFLGKQIRAGAFQALDKSKLPNWEHLDPALLKQLQKNDPG 119

Query: 119 NKFSLPYIWGITGLYYNSSTLPNGI-TKWADLWDKQYEQQ---------VMLIDDIRDVF 168
           N  + PY+WG  G+ YN   +   +     D W   +E +         +  +D   ++ 
Sbjct: 120 NAHAAPYLWGTNGIGYNVEKVKAALGVDEIDSWSVIFEPENAAKLASCGIAFLDSADEMI 179

Query: 169 GMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNA 228
              L   G   N++N  + +KA E L+A++ +V  ++S        +G   +   ++G+ 
Sbjct: 180 PAMLNYLGLDPNSENAADYQKAEEKLLAVRPHVRYFHSSKYISDLANGNICVAAGFSGDV 239

Query: 229 YQGQVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEI 282
           +Q      E      + + +P EGA LW D   IP+ + N+  AH FIN++ +PE  A +
Sbjct: 240 FQAAARAEEAGKGIEIAYAIPAEGANLWFDMLAIPADASNVEEAHAFINYLLRPEVIAAV 299

Query: 283 VQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLRN 342
              +GYA+       L+  E+R++ +++P  E + +     ++ P+   +  + W ++++
Sbjct: 300 SDYVGYANPNLKAGELMDQEVREDASVYPPQEVLDRLYVSAELPPKIQRLMTRTWTKVKS 359