Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  142 bits (359), Expect = 1e-38
 Identities = 91/322 (28%), Positives = 163/322 (50%), Gaps = 15/322 (4%)

Query: 8   LVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKL 67
           ++L  +  S+ ++A +TL +  W  YL E  +K ++ + GV I    F++ +    ++  
Sbjct: 19  MLLGLLSPSTSLHAGETLTLLTWEEYLSEAVIKRWQAETGVEIRQVYFDSGDKR-DEILA 77

Query: 68  LKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAHDPQNKFSLPYIW 127
                 D+         + G  GLL  +D   +  +  A P       D   ++S+PY+W
Sbjct: 78  KPDHQIDIALTELISSTRFGARGLLQPLDEPSLAELHRAAPRW----RDSCGRYSVPYLW 133

Query: 128 GITGLYYNSSTLPNGITKWADLWD--KQYEQQVMLIDDIRDVFGMALKLNGFSINTKNEE 185
           G  G+ Y S  L      WADL    +  E  +++++D  D+    L L   SINT + +
Sbjct: 134 GTLGIAYRSDRLDFVPHSWADLLRPARPDEPHIIMMEDHEDILASPLLLLKHSINTSDND 193

Query: 186 EIKKAYESLVALKKNVLLYNS--DAPHVPYVSGEATLGMQWNG-----NAYQGQVEMPEL 238
           E+K A+E LV+  + VL Y     A         A + + ++G     N  +G VE    
Sbjct: 194 ELKAAFELLVSQSEAVLTYEYVITALRSQRHLERADMALAYSGDQQVLNQVEG-VEGEPW 252

Query: 239 KFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYASATKGGRAL 298
           ++V+PEEG +LW+D  ++PS ++N PLA++F+NF+ +P+        LG A+     +AL
Sbjct: 253 RYVVPEEGTLLWVDCLSVPSIARNKPLAYRFLNFLNRPDIAVLNAAELGVATPNAAAQAL 312

Query: 299 LPAELRDNPTIFPSDEDMKKGE 320
           LP E+R++ TI+P+++ + + +
Sbjct: 313 LPEEIRNDLTIYPAEKVLARSQ 334