Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., extracellular solute-binding protein, family 1 from Pseudomonas syringae pv. syringae B728a

 Score =  151 bits (381), Expect = 3e-41
 Identities = 92/364 (25%), Positives = 187/364 (51%), Gaps = 23/364 (6%)

Query: 1   MKTFIKGLV---LSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFEN 57
           MK F K L+   L  VVA++    ++ L+VY W  Y+   ++  FE++ G+ + Y  F++
Sbjct: 1   MKKFGKTLLALSLMGVVATAAQADDKVLHVYNWSDYIAPDTIAKFEKESGIKVVYDVFDS 60

Query: 58  NESMYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAH-- 115
           NE++  KL L   +GYDVV  S  F+ K  + G+  E+D +++PN K+   ++L      
Sbjct: 61  NETLEAKL-LAGKSGYDVVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVS 119

Query: 116 DPQNKFSLPYIWGITGLYYNSSTLPNGITKWADL--WDKQYEQQ---------VMLIDDI 164
           DP NK++ PY+WG  G+  N   +   +   A +  WD  ++ +         +  +D  
Sbjct: 120 DPDNKYAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSP 179

Query: 165 RDVFGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQW 224
            ++  +AL    +  ++++++++ KA E  + ++ ++  ++S        +G   + + +
Sbjct: 180 TEMLPIALHYLDYPTDSQDKKQLAKAEELFMTIRPSIGYFHSSKYISDLANGNICVAVGY 239

Query: 225 NGNAYQGQVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPEN 278
           +G+ YQ +    E      + + +P++GA  + D   IP  ++N+  A+KF+NF+ +PE 
Sbjct: 240 SGDIYQAKSRAAEAGGKVKVAYNIPKKGAGSFYDMVAIPKDAQNVEGAYKFMNFLMRPEV 299

Query: 279 QAEIVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQ 338
            AEI  ++ + +      AL+  E+  +P ++P  +   K   I D+   T  I  + W 
Sbjct: 300 MAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWT 359

Query: 339 RLRN 342
           ++++
Sbjct: 360 KIKS 363