Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., extracellular solute-binding protein, family 1 from Pseudomonas syringae pv. syringae B728a

 Score =  155 bits (393), Expect = 1e-42
 Identities = 102/357 (28%), Positives = 182/357 (50%), Gaps = 22/357 (6%)

Query: 5   IKGLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTK 64
           +K  + + V+ +S  +A +T+N+Y W  Y+   +LK FE   G    Y TFE NE++  K
Sbjct: 2   LKKSLAALVLLASTSHAAETVNIYNWTDYIAPDTLKNFEAATGFKTTYETFETNEALNAK 61

Query: 65  LKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAH--DPQNKFS 122
           L L   +G+DVVF S +F+ +  + GLL  +D  Q+PN K+  P +L      DP N+  
Sbjct: 62  L-LAGHSGHDVVFPSIHFMGRQIQSGLLKTLDKRQLPNWKNLNPVLLKALEGSDPGNQHG 120

Query: 123 LPYIWGITGLYYNSSTLPNGITKWA--DLWD---------KQYEQQVMLIDDIRDVFGMA 171
            PY+WG TG+ Y+++ +   + K A  D WD         K  +  V+ +D    +  + 
Sbjct: 121 FPYLWGSTGIGYDTTKVKAILGKDAPLDSWDLVLKPENMKKLAQCGVVFLDSAPALLPIT 180

Query: 172 LKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQG 231
           L   G   +++  ++ ++A   L +++  V  ++S         G   + + ++G+  Q 
Sbjct: 181 LNYLGLPPHSEVPDDYRQAKAVLDSVRPYVRNFSSADYIADLAKGRICVAVGYSGDISQA 240

Query: 232 QVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQS 285
           Q +  +      + + +P+EGA +W D   IP+ + +I  A+ F+N++ +PE  A I  +
Sbjct: 241 QEQAQKEGNGITIDYAVPKEGAPMWFDMVAIPADATDIKGAYAFLNYLLRPEVIANITNT 300

Query: 286 LGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETL-AIYEKYWQRLR 341
           + YA+  +   AL+   L  + T++P D DM    F+    P+T+ A+ EK W   R
Sbjct: 301 VHYANGNEKADALIGPGLWTDTTVYP-DADMLSRLFVMSQVPDTIDALREKLWDSFR 356