Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  164 bits (415), Expect = 3e-45
 Identities = 101/356 (28%), Positives = 186/356 (52%), Gaps = 24/356 (6%)

Query: 8   LVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKL 67
           LV + V+ S+ V AE+ + VY W  Y+ E +L+ F+++ G+ + Y  F+ NE +  + KL
Sbjct: 12  LVTAGVLGSAAVSAEEVVRVYNWSDYIAEDTLENFQKETGIRVIYDVFDTNEVL--EAKL 69

Query: 68  LKG-TGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAH--DPQNKFSLP 124
           L G +GYD+V  SA+F+ K  + G   ++D +++ N K     ++      DP N+ ++P
Sbjct: 70  LSGRSGYDLVVPSAHFLAKQIKAGAFMKLDKSKLTNEKHLNKNLMTQLQKSDPGNEHAVP 129

Query: 125 YIWGITGLYYNSSTLPNGITKWA--DLWD---------KQYEQQVMLIDDIRDVFGMALK 173
           Y+WG TG+ +N + +   + + A  D WD         K  +  + ++D   ++   AL 
Sbjct: 130 YLWGTTGIGFNVAKVKEVLGEDAPVDSWDLIFNPANAEKLAKCGIAVLDSPDEILPPALN 189

Query: 174 LNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQV 233
             G + N+ +  + +KA E L+ ++  +  ++S        +GE    + W+G+  Q Q 
Sbjct: 190 YLGLNPNSTDPADYEKAGEVLLKIRPYLKYFHSSRYISDLANGEICAAIGWSGDVLQAQA 249

Query: 234 EMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLG 287
              E      + + +P+EGA LW D   IP+ + N   A  F+N++ +PE  A I   + 
Sbjct: 250 RAEEAGNGQQVDYRIPKEGAPLWFDMMAIPADAANADNALTFMNYLMRPEVIASISNYVA 309

Query: 288 YASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGP-ETLAIYEKYWQRLRN 342
           YA+A  G   LL  E+  NP ++PS+E + K  ++ +V P +T     + W ++++
Sbjct: 310 YANANDGSNPLLDEEVAKNPAVYPSEETLAK-LYLGEVRPMKTQRAMTRIWTKIKS 364