Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., extracellular solute-binding protein, family 1 (NCBI) from Rhodospirillum rubrum S1H

 Score =  152 bits (383), Expect = 2e-41
 Identities = 88/359 (24%), Positives = 183/359 (50%), Gaps = 23/359 (6%)

Query: 5   IKGLVLSAVVASSQVYAE-QTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYT 63
           + G+ ++ ++A     AE + LNVY W  Y+ E +L  F+ + G+ +NY  +++NE + +
Sbjct: 9   LSGVAVALLIAGPAAAAEDKVLNVYNWSDYIAEDTLAKFQAETGIKVNYDVYDSNELLES 68

Query: 64  KLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMP--TVLGLAHDPQNKF 121
           KL L   +GYD+V  + + + ++ + G++ ++D  +IPN+ +  P  T    A+D  N  
Sbjct: 69  KL-LAGSSGYDIVVPTDHTLSRLIQAGIVQKLDKAKIPNLANLDPKLTARAAAYDADNAH 127

Query: 122 SLPYIWGITGLYYNSSTLPNGI------TKWADLWDKQYEQQ-----VMLIDDIRDVFGM 170
           S+ Y WG  GL  N   +   +        +  L+  +Y ++     + ++D   +VF +
Sbjct: 128 SVIYEWGTNGLGINIDKVRAALGPDVKLDSFDLLFKPEYAEKLASCGIHVLDSAAEVFSV 187

Query: 171 ALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQ 230
           A    G   N+ + ++++KA    + ++  +  ++S        +G+  +   ++G+ +Q
Sbjct: 188 ARNYLGLEPNSTDPKDLEKATALWMGVRPYIQKFHSSEFINALANGDICVAFGYSGDIFQ 247

Query: 231 GQVEMP--------ELKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEI 282
            Q +          ++ +++P+EG ++W D   +P+ + +   AHKFI+F+ QP+  A+I
Sbjct: 248 AQAQARAKEAANGVKIDYIIPKEGTLIWFDLMAVPADAPHPENAHKFIDFILQPQISADI 307

Query: 283 VQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLR 341
              + YA+A      LL   +R NP+I+P+ E M +        PE   +  + W +++
Sbjct: 308 SNYVWYANANSKATELLDEAVRTNPSIYPTQEVMDRLFIQKTASPEMERLRTRAWNKIK 366