Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., putrescine-binding periplasmic protein PotF from Phaeobacter inhibens DSM 17395

 Score =  147 bits (371), Expect = 4e-40
 Identities = 95/358 (26%), Positives = 173/358 (48%), Gaps = 21/358 (5%)

Query: 5   IKGLVLSAVVA-SSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYT 63
           +K + L+A+VA SS     + + VY W  Y+ E  L+ FE + G+ + Y  F++NE + T
Sbjct: 3   LKTMTLTAIVALSSAAAVAEEVRVYNWSDYIDEDLLEKFETETGIDLIYDVFDSNELLET 62

Query: 64  KLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HDPQNKF 121
           K+ L  G+GYDVV  +  F+ +  + G   ++D +++ N  +    +      +DP N +
Sbjct: 63  KM-LAGGSGYDVVVPTGSFLARQIQAGAFQKLDTSKLSNAGNMWDVIEDRTARYDPDNLY 121

Query: 122 SLPYIWGITGLYYNSSTLPNGITKWA-----------DLWDKQYEQQVMLIDDIRDVFGM 170
           S+ Y+WG TG+  N++ +   +   A           D  +K     V  +D   ++   
Sbjct: 122 SVNYMWGTTGIGANTAKVEEALGADAPIDSLELVFNPDNIEKLANCGVYFLDAPDEMIPA 181

Query: 171 ALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQ 230
           ALK  G   N+ + + + KA   L+A++  V  ++S        +G+  +   W+G+  Q
Sbjct: 182 ALKYIGEDPNSMDPDVVAKAEPVLMAIRPYVKKFHSSEYINALANGDICVAFGWSGDILQ 241

Query: 231 GQVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQ 284
            +    E      + F  P+EGA++W D   IP  + N   AHKF+NF+ + EN A    
Sbjct: 242 ARDRADEADNGVEIVFNAPKEGALMWFDQMAIPVDAPNPDGAHKFLNFIMEAENMAAASN 301

Query: 285 SLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLRN 342
            + YA+  K  +  L  ++  +P I+PS+E +K         P+      + W ++++
Sbjct: 302 YVYYANGNKASQEFLEEDVIGDPAIYPSEETLKNLYIKEAYPPKVQRKATRMWTKIKS 359