Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  164 bits (414), Expect = 4e-45
 Identities = 97/340 (28%), Positives = 180/340 (52%), Gaps = 23/340 (6%)

Query: 8   LVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKL 67
           LV + V  SS V AE+ + VY W  Y+ E +L  FE++ G+ + Y  F++NE +  + KL
Sbjct: 12  LVTAGVFTSSVVSAEEVVRVYNWSDYIAEDTLANFEKETGIKVIYDVFDSNEVV--EAKL 69

Query: 68  LKG-TGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAH--DPQNKFSLP 124
           L G +GYD+V  S  F+ K  + G   ++D +Q+ N K+  P ++      DP+N+ ++P
Sbjct: 70  LSGRSGYDIVVPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQLETADPRNEHAVP 129

Query: 125 YIWGITGLYYNSSTLPNGITKWAD------LWDKQYEQQVM-----LIDDIRDVFGMALK 173
           Y+WG TG+ YN + +   + + A       +++ +Y +++      L+D   ++  MA+ 
Sbjct: 130 YLWGTTGIGYNEAKVKQVLGEDAPVDSLELIFNPKYAEKIAKCGFSLLDSADEMLPMAMI 189

Query: 174 LNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQV 233
             G   N+   E+  KA E +  ++  V  ++S        +G+  +   ++G+ +Q   
Sbjct: 190 YLGLDPNSTKSEDYAKAGEVMAKIRPFVTYFHSSRYITDLANGDICVAFGYSGDVFQAAA 249

Query: 234 EMPELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLG 287
              E +      + +P+EG+ LW D   IP+ +KN+  AH FIN++ +PE  A I   + 
Sbjct: 250 RAEEAENGNVIGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLRPEVIAPITNYVA 309

Query: 288 YASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGP 327
           YA+     + L+  E+R++  I+P+ E + +  ++ DV P
Sbjct: 310 YANPNVPAQELVDEEIRNDAAIYPTPEVLSR-LYVADVRP 348