Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (391), Expect = 2e-42
 Identities = 97/368 (26%), Positives = 190/368 (51%), Gaps = 29/368 (7%)

Query: 1   MKTFIK----GLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFE 56
           MK F K     LV +  +AS  V AE+ + +Y W  Y+ E +L+ F+++ G+ + Y  F+
Sbjct: 1   MKLFNKMTTLALVTAGTLASVAVQAEEVVRMYNWSDYIAEDTLENFKKETGIRVIYDVFD 60

Query: 57  NNESMYTKLKLLKG-TGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAH 115
           +NE +  + KLL G +GYD+V  S +F+ K  + G    +D +++ N K+    ++ L  
Sbjct: 61  SNEVV--EAKLLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLTNFKNLNADLMKLLE 118

Query: 116 --DPQNKFSLPYIWGITGLYYNSSTLPNGITKWAD-------LWDKQYEQQVM-----LI 161
             DP N++++PY+WG  G+ YN + +   + + A        +++ +Y +++      ++
Sbjct: 119 KADPGNQYAVPYLWGTNGIGYNINKVKAAVGEDAPPFNSMELIFNPKYAEKISKCGFAML 178

Query: 162 DDIRDVFGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLG 221
           D   D+   A+   G   N+   E+ +KA E L  ++  V  ++S        +G+  + 
Sbjct: 179 DSADDMVPQAMIYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISDLANGDICVA 238

Query: 222 MQWNGNAYQGQVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQ 275
             ++G+ +Q      E      + + +P+EGA LW D   IP+ + N+  AHK IN++ +
Sbjct: 239 YGFSGDVFQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADATNVENAHKLINYLLR 298

Query: 276 PENQAEIVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGP-ETLAIYE 334
           PE  A I   + YA+     + L+   +R++P I+P  E + K  +I ++ P +   +  
Sbjct: 299 PEVIAPISNYVAYANPNDLAQPLVDEAIRNDPAIYPPKEVLDK-LYIGEIRPLKIQRVLT 357

Query: 335 KYWQRLRN 342
           + W ++++
Sbjct: 358 RVWTKVKS 365