Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., extracellular solute-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score =  154 bits (388), Expect = 5e-42
 Identities = 96/367 (26%), Positives = 187/367 (50%), Gaps = 28/367 (7%)

Query: 1   MKTFIK----GLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFE 56
           MK F K     LV +  +AS    AE+ + VY W  Y+ E +L+ F+++ G+ + Y  F+
Sbjct: 22  MKLFNKMTTLALVTAGALASVAAQAEEVVRVYNWSDYIAEDTLENFKKETGIRVIYDVFD 81

Query: 57  NNESMYTKLKLLKG-TGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAH 115
           +NE +  + KLL G +GYD+V  S +F+ K  + G    +D +++ N K+    ++    
Sbjct: 82  SNEVL--EAKLLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLSNFKNLNADLMKQLE 139

Query: 116 --DPQNKFSLPYIWGITGLYYNSSTLPNGITKWAD------LWDKQYEQQVM-----LID 162
             DP N++++PY+WG  G+ YN   +   + + A       +++ +Y +++      ++D
Sbjct: 140 KADPGNQYAVPYLWGTNGIGYNIDKVKAAVGEDAPFDSMELIFNPKYAEKISKCGFAMLD 199

Query: 163 DIRDVFGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGM 222
              D+   A+   G   N+   E+ +KA E L  ++  V  ++S        +G+  +  
Sbjct: 200 SADDMVPQAMIYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISDLANGDICVAF 259

Query: 223 QWNGNAYQGQVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQP 276
            ++G+ +Q      E      + + +P+EGA LW D   IP+ + N+  AHK IN++ +P
Sbjct: 260 GFSGDVFQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADAANVENAHKLINYLLRP 319

Query: 277 ENQAEIVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGP-ETLAIYEK 335
           E  A I   + YA+     + L+   +R++P I+P  E + K  +I ++ P +   +  +
Sbjct: 320 EVIAPISNYVAYANPNDPAQPLVDEAIRNDPAIYPPKEVLDK-LYIGEIRPLKIQRVLTR 378

Query: 336 YWQRLRN 342
            W ++++
Sbjct: 379 VWTKVKS 385