Pairwise Alignments

Query, 507 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella loihica PV-4

 Score = 99.4 bits (246), Expect = 3e-25
 Identities = 109/422 (25%), Positives = 168/422 (39%), Gaps = 91/422 (21%)

Query: 57  IALRAQNSVDWVALDLAAMWSHIVMVPVPTFFTSEQVAHLLNEANVELC-LGDWPELGS- 114
           +A+ +QN   W   D+  + +  V+VP+    T EQ  +++++A  +L  +GD  +    
Sbjct: 64  VAILSQNCPQWTCADVGVLKAKAVVVPIYPTSTLEQARYIIDDAQAKLIFVGDAEQYRMA 123

Query: 115 -------PSLT----------------VGGFDAWHYQGNKPR-------NRPNRVLAGTQ 144
                  PSLT                   FD+   Q + P           N  L    
Sbjct: 124 RELLAICPSLTQIVVFDAEVALKQEDTAVHFDSLLTQTHSPEVDAELAHRLANLALDDLL 183

Query: 145 KITFTSGSTGTPKGVCLSEENLERVTLAIAEQMS-AQVEQHLVMLPLATLLENITGIYV- 202
            + +TSG+TG PKGV L   N+  V       +     +  L  LPL+ + E     YV 
Sbjct: 184 TLIYTSGTTGDPKGVMLDYRNIASVIRQHDTILPFTPGDVSLAFLPLSHVFERGWSFYVL 243

Query: 203 -----------------------PLLLGV---------------------TSSVLFGESV 218
                                  P  L V                     T   LF  ++
Sbjct: 244 CRGGHNVYLKDPMTVKEAIVDIRPHTLCVVPRFLEKVYSAVQDKVNKAPDTRKKLFAWAM 303

Query: 219 GLSGSSQFSPTQFANVLSVYQPSSLVLTPALLMALIQVVKQAPELAKSLQWVAVGGARVA 278
            + G  QF  +Q     S +  +   L   L+ + +Q V     L   L+++  GGA + 
Sbjct: 304 SV-GERQFEVSQGRAKASWWLKTQWKLAHKLVYSKLQQV-----LGGRLKFMPCGGAALD 357

Query: 279 AELIHSARALGIPAYEGYGLSECASVVSMNTPQHDQPGSCGKPLSHLQIQLAEDGELWVR 338
             +      + IP   GYG++E  + V+ NT  +   GS GK L  ++I+L +D E+ VR
Sbjct: 358 QNVASFFHGIDIPVLCGYGMTETTATVTCNTLDNRVAGSNGKTLPEVEIKLGKDNEILVR 417

Query: 339 GNSAL-GYIGEP------LTDEWLATGDLATLDEQGFLCIVGRKKNLIITPFGRNIAPEW 391
           G++ + GY   P        D WL TGD   +DEQG L I  R K L+ T  G+ IAP+ 
Sbjct: 418 GDTVMRGYYNRPQETADSFEDGWLKTGDAGQIDEQGNLFITDRIKELMKTSNGKYIAPQR 477

Query: 392 IE 393
           +E
Sbjct: 478 VE 479