Pairwise Alignments

Query, 507 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 92.0 bits (227), Expect = 5e-23
 Identities = 116/497 (23%), Positives = 205/497 (41%), Gaps = 60/497 (12%)

Query: 35  YSQLLERVDLIANQLQRLS---ANCIALRAQNSVDWVALDLAAMWSHIVMVPVPTFFTSE 91
           ++++ E+V  +A  L+ L     + IA+ ++N  +W   DLA M    + VP+      +
Sbjct: 38  WNEVQEKVQQLAGALRHLGLEPGDKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANPD 97

Query: 92  QVAHLLNEANVE-LCLGDWPELGSPSLTVGG--------FDAW--HYQGNKPRNRPNRVL 140
            + ++L  +  + + LG           VGG        +D     YQ  +  N  N ++
Sbjct: 98  TIRYVLQHSGAKAIFLGKLDHWADQEAGVGGELLRLAMPYDTMPAQYQWEQLLNMGNPLI 157

Query: 141 AGT-------QKITFTSGSTGTPKGVCLSEENLERVTLAIAEQMSAQVEQHLVM-LPLAT 192
                       + +TSGSTG PKG   +  +      A+   +       L+  LPLA 
Sbjct: 158 EAPLPEPDQIMTLIYTSGSTGQPKGAIQTFASYGWTCQAVVRDLRTNGNDRLLSYLPLAH 217

Query: 193 LLENITGIYVPLLLGVTSSVLFGESVG--LSGSSQFSPTQFANV---LSVYQPS------ 241
           + E +         G  S V F ES+   ++   +  PT F +V    S++Q +      
Sbjct: 218 ITERVAIEGSSFYSG--SVVAFVESLDSFVADVQRAKPTVFFSVPRLWSLFQKNIIDKIG 275

Query: 242 ----SLVLTPALLMALIQVVKQAPELAKSLQWVAVGGARVAAELIHSARALGIPAYEGYG 297
               +L+L   L+ +L++            + +  G A +   LIH   ++G+   E +G
Sbjct: 276 VSKLNLLLKIPLISSLVKHKIHKGLGLNHCRLLGSGSAPIPPSLIHWYHSIGLNICEAWG 335

Query: 298 LSECASVVSMNTPQHDQP-GSCGKPLSHLQIQLAEDGELWVRGNSAL-GYIGEPLT---- 351
           ++E  +   +N P   +  G+ GKP+   QI+  EDGEL ++    +  Y  +P      
Sbjct: 336 MTENCAYSIINYPFDVRKIGTVGKPVQDCQIRQGEDGELLIKSPGLMTAYYLQPEATAAA 395

Query: 352 ---DEWLATGDLATLDEQGFLCIVGRKKNLIITPFGRNIAPEWIESHAQVWLPQCRFVVV 408
              D +  TGDL  +D  G + I GR K+   T  G+ +AP  IE             V+
Sbjct: 396 FDADGFFHTGDLCAIDADGCVTITGRVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVI 455

Query: 409 GDDEVGLVAVI-----------DRLMPDLEQRVQQINHQLPDYAQIQQLLFVNQP-SAWQ 456
           G      VA++           + +   L+  +  +N  L  +  +  ++ VN+P S   
Sbjct: 456 GSGLPHPVALVQLSEGANLQAREEVRASLKATLDSVNPHLESHEHVDAIVVVNEPWSIEN 515

Query: 457 AWLTANGRPKRALIENA 473
             LT   + KR ++E A
Sbjct: 516 DVLTPTLKIKRHVLEKA 532