Pairwise Alignments

Query, 507 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 96.3 bits (238), Expect = 3e-24
 Identities = 127/531 (23%), Positives = 209/531 (39%), Gaps = 150/531 (28%)

Query: 56  CIALRAQNSVDWVALDLAAMWSHIVMVPVPTFFTSEQVAHLLNEANVELCLGDWPELGS- 114
           C+ L +QN   W   D+  + S  ++VP+    T EQ + ++N+A  ++   D  +  + 
Sbjct: 35  CVIL-SQNCPQWTCADVGTLKSRAIVVPIYPTSTVEQASFIVNDAAAKVIFVDDAKQYAL 93

Query: 115 --------PSLT-VGGFDAW-HYQGNKPRNRPNRVLAGTQ-------------------- 144
                   P+L  V  FDA      +KP+++    L   +                    
Sbjct: 94  ACELQTLCPTLEHVIVFDAAVQLAQDKPQHKHLDSLLALEYDQSAELEQRLKDANLDDLL 153

Query: 145 KITFTSGSTGTPKGVCLSEENLERVTLAIAEQMSAQVEQHLVMLPLATLLENITGIYVPL 204
            + +TSG+TG PKGV L   N           M++ V QH ++LP  T   +++  ++PL
Sbjct: 154 TLIYTSGTTGDPKGVMLDYRN-----------MASTVHQHDLILPFKT--GDVSLAFLPL 200

Query: 205 L----LGVTSSVLF--GESVGLSGSSQFSPTQFANVLSVYQPSSLVLTPALLMALI---- 254
                 G +  VL   G +V L  + +         +S  +P +L + P  L  +     
Sbjct: 201 SHVFERGWSFYVLCRGGRNVYLQNTQRVK-----EAISAVRPHTLCVVPRFLEKVYSAVQ 255

Query: 255 -QVVKQAPELAK--------------------------SLQW------------------ 269
            +V K A    K                          SLQW                  
Sbjct: 256 DKVAKSAEGRKKLFAWAMGVGERQFEVSQGRVKGGLWLSLQWRLANKLVYSKLQAVLGGR 315

Query: 270 ---VAVGGARVAAELIHSARALGIPAYEGYGLSECASVVSMNTPQHDQPGSCGKPLSHLQ 326
              +  GGA +   +     A+GIP   GYG++E  + V+ NT  +   GS GK L  +Q
Sbjct: 316 LKFMPCGGAALDLNVASFFHAIGIPVLCGYGMTETNATVTCNTLDNRVAGSNGKVLPEIQ 375

Query: 327 IQLAEDGELWVRGNSAL-GYIGEP------LTDEWLATGDLATLDEQGFLCIVGRKKNLI 379
           I+L +D E+ VRG++ + GY   P        D WL TGD   LD  G L I  R K L+
Sbjct: 376 IKLGKDDEILVRGDTVMRGYYNRPEDTAAAFEDGWLKTGDAGRLDAHGNLFITDRIKELM 435

Query: 380 ITPFGRNIAPEWIESHAQVWLPQCRFV----VVGDDEVGLVAVI---------------- 419
            T  G+ IAP+ +E      + +C F+    V+ D    + A+I                
Sbjct: 436 KTSNGKYIAPQRVEG----TVGRCPFIEQVAVIADARNYVTALIVPAFESLEAWAKEKGL 491

Query: 420 -----------DRLMPDLEQRVQQINHQLPDYAQIQQLLFVNQPSAWQAWL 459
                        ++   EQR++ +  +L  + QI++   + +  + +A L
Sbjct: 492 KYESPIELLRHSHVVEHFEQRLKHLQQELAGFEQIKKFTLLPEAFSMEAGL 542