Pairwise Alignments

Query, 486 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  211 bits (536), Expect = 7e-59
 Identities = 157/496 (31%), Positives = 258/496 (52%), Gaps = 46/496 (9%)

Query: 30  LLSVQQLAIS----TAQETLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGLR 85
           L+ V+ LA+       ++ +VE +SF++   + L ++GE+GSGKS+ A++I+  LP  L 
Sbjct: 6   LIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLA 65

Query: 86  SQ--GKIALFGQYQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAEV---HRL 140
               G I   GQ      +     + G ++A++ QEP  +LNP+    +Q+ EV   H+ 
Sbjct: 66  HHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHKG 125

Query: 141 VMGNHAASAALTDSAFQQVAL---HQDLSKYPHQLSGGMAQRVAYLCATQTQAPLLIADE 197
           + G  A    L     + V +   H+ L   PH+LSGG  QRV    A   +  LLIADE
Sbjct: 126 LSGKVATRRTL--ELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADE 183

Query: 198 PTKGLDASRRDQIIALL-QAQLTRG-ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQ 255
           PT  LD + + +I+ LL Q Q   G +LL I+HD+ +  ++   + VM++G I EQ   +
Sbjct: 184 PTTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCE 243

Query: 256 QVLSHPQSDYTKALINADPRYWPTTPQSKTGEPLLTVDNIAMHRG-EKCLF--------- 305
           ++   PQ  YT+ L+ A+P   P +  +  G PLL V+++ +    +K LF         
Sbjct: 244 ELFRAPQHPYTRELLGAEPSGTPAS--NVVGPPLLQVEDLKVWFPIKKGLFKRTVDYIKA 301

Query: 306 -DSLSFTLSAGEILGISGDSGCGKSTLADLLLGLLKPSQGRIH----------RLQAIPL 354
            D + F+L  G+ LGI G+SG GKSTL   +L L+  SQG I           + Q  PL
Sbjct: 302 VDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIG-SQGGIRFEGKQLDSLTQQQVRPL 360

Query: 355 GKALKL-YQDPPSALAKSVTLQTLLEDVCRQHSV-----ERSQIPRLLERLALSPNLLSR 408
            + +++ +QDP  +L+  + +  ++ +  R H +     +   I   L+ + L P   +R
Sbjct: 361 RREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKIGTEAEQEQAIIAALKEVGLDPETRNR 420

Query: 409 KANQVSGGELQRFAILRALLTRPTLLVADEPTSRLDPITAASTLQLIIELTQEIGCALVL 468
             ++ SGG+ QR AI RAL+ +P L++ DEPTS LD       ++L+  L  +     + 
Sbjct: 421 YPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLF 480

Query: 469 ISHDKLALEKTCHRVL 484
           ISHD   ++   H+++
Sbjct: 481 ISHDLAVVKALSHQLM 496



 Score =  115 bits (287), Expect = 5e-30
 Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 46  VESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGLRSQGKIALFGQYQHQRTQAER 105
           V+ + F L   Q L I+GE+GSGKS L  AI+  +     SQG I   G+     TQ + 
Sbjct: 302 VDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIG----SQGGIRFEGKQLDSLTQQQV 357

Query: 106 EALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRL-VMGNHAASAALTDSAFQQVALHQD 164
             L  +++ V+ Q+P+ +L+P M   + V E  R+  +G  A       +A ++V L  +
Sbjct: 358 RPL-RREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKIGTEAEQEQAIIAALKEVGLDPE 416

Query: 165 L-SKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDASRRDQIIALLQAQLTRGAL 223
             ++YPH+ SGG  QR+A   A   +  L++ DEPT  LD + + Q++ LL++  T+  L
Sbjct: 417 TRNRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNL 476

Query: 224 --LTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQSDYTKALINA 272
             L I+HD+ V + L   ++V++ G + EQG A+ + + PQ  YT+ L+ A
Sbjct: 477 TYLFISHDLAVVKALSHQLMVVKHGQVVEQGDARSIFAAPQHPYTQQLLEA 527