Pairwise Alignments

Query, 486 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  206 bits (523), Expect = 2e-57
 Identities = 156/491 (31%), Positives = 253/491 (51%), Gaps = 42/491 (8%)

Query: 30  LLSVQQLAISTAQETLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAG-LRSQG 88
           L+ ++ L+++   +T+V +L  ++   + L ++GE+GSGKS+ A++I+  LP     + G
Sbjct: 11  LIEIRDLSVAFNDQTVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENEAHTSG 70

Query: 89  KIALFGQ-YQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLVMGNHAA 147
            I   GQ      TQA RE L G ++A++ QEP  +LNP+    +Q+ E   L  G    
Sbjct: 71  SIRYRGQELVGADTQALRE-LRGNRIAMIFQEPMTSLNPLHSVEKQIGETLMLHKGLGGK 129

Query: 148 SAA------LTDSAFQQVALHQDLSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKG 201
           +A       LT    Q     + L  YPHQLSGG  QRV    A   +  LLIADEPT  
Sbjct: 130 AARQRILELLTLVGIQNPV--ERLKAYPHQLSGGQRQRVIIAMALACEPELLIADEPTTA 187

Query: 202 LDASRRDQIIALLQAQLTR--GALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLS 259
           LD + + +I+ LL++   R   +LL I+HD+ +   +   + VM+ G I EQ P + + S
Sbjct: 188 LDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLFS 247

Query: 260 HPQSDYTKALINADPRYWPTTPQSKTGEPLLTVD-------NIAMHRGEKCL--FDSLSF 310
            P+  Y+  L++A+P      P+    E L   D       +  + R ++ L   D +S 
Sbjct: 248 APKHPYSCELLHAEPE-GEALPRDDREEVLQVQDLRVSFPLSGGLFRRKEYLRAVDGISL 306

Query: 311 TLSAGEILGISGDSGCGKSTLADLLLGLLKPSQGRIHRLQAIPLG----KALK------- 359
           ++  G+ LGI G+SG GKSTL   +L L++ S+G I R Q   L     KAL+       
Sbjct: 307 SIQRGKTLGIVGESGSGKSTLGQAILRLIE-SEGSI-RFQGQALDHLSQKALRPWRKQMQ 364

Query: 360 -LYQDPPSALAKSVTLQTLLEDVCRQHSVE-----RSQIPRLLERLALSPNLLSRKANQV 413
            ++QDP  +L+  +++Q ++ +    H         +++ + L+ + L P    R  ++ 
Sbjct: 365 VVFQDPFGSLSPRMSVQQIISEGLEVHQPSSPEQCEARVIQALKEVGLDPATRHRYPHEF 424

Query: 414 SGGELQRFAILRALLTRPTLLVADEPTSRLDPITAASTLQLIIELTQEIGCALVLISHDK 473
           SGG+ QR AI RAL+ +P L++ DEPTS LD       + L+ +L Q+     + ISHD 
Sbjct: 425 SGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFISHDL 484

Query: 474 LALEKTCHRVL 484
             +    H ++
Sbjct: 485 AVVRALAHDMI 495



 Score =  111 bits (278), Expect = 5e-29
 Identities = 79/234 (33%), Positives = 123/234 (52%), Gaps = 15/234 (6%)

Query: 46  VESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGLRSQGKIALFGQ-YQHQRTQAE 104
           V+ +S  +   + L I+GE+GSGKS L  AI+  +     S+G I   GQ   H   +A 
Sbjct: 301 VDGISLSIQRGKTLGIVGESGSGKSTLGQAILRLI----ESEGSIRFQGQALDHLSQKAL 356

Query: 105 REALWGKQLAVLPQEPWHALNPIMRAGEQVAE---VHRLVMGNHAASAALTDSAFQQVAL 161
           R   W KQ+ V+ Q+P+ +L+P M   + ++E   VH+        +  +   A ++V L
Sbjct: 357 RP--WRKQMQVVFQDPFGSLSPRMSVQQIISEGLEVHQPSSPEQCEARVI--QALKEVGL 412

Query: 162 HQDLS-KYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDASRRDQIIALLQAQLTR 220
                 +YPH+ SGG  QR+A   A   +  L++ DEPT  LD + + Q++ALL+    +
Sbjct: 413 DPATRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQQK 472

Query: 221 GAL--LTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQSDYTKALINA 272
             L  L I+HD+ V   L   +IV++ G + EQG +  V   PQ  YTK L+ A
Sbjct: 473 YDLTYLFISHDLAVVRALAHDMIVIKDGKVVEQGASHDVFDSPQHPYTKELLAA 526