Pairwise Alignments

Query, 270 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  106 bits (265), Expect = 5e-28
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 8/256 (3%)

Query: 19  GVSLLILLVMLVLIEHLLYGGDPAKQDLNRALAAPSWGEP-------LGTDHYGRSNFAR 71
           G+  +  L++L L   L+    P  QD    L APSW EP       LGTD  GR  F+R
Sbjct: 32  GLWAVCCLLLLALFGPLIAPYSPEHQDPLALLLAPSW-EPTGTVEHFLGTDDLGRDIFSR 90

Query: 72  LSSAIATSLTMAVACVSSSALLGLVTGVVAAWKRGWWDRGFSWLLNMLLAMPGLILVLLF 131
           L      +  MA+A V ++ LLG + G ++   +G      S LL+ LL++P L++ +L 
Sbjct: 91  LLHGAHLTFGMALAIVITALLLGFIIGSISGMMKGLKSSILSHLLDALLSIPSLLMAILV 150

Query: 132 GAMVPGSFFILYLAIALMLWVEFFRVVRSKTLSLLEQPQIEASRLYGFNAWYLFRRHLWP 191
            A+       ++ A+ + L  +F R +       L++  + A+RL G N+  +F   + P
Sbjct: 151 VAVTGPGLGNVFWAVGIALTPQFVRAIHQAVHEELQKEYVTAARLDGANSLQIFWYVILP 210

Query: 192 ELREDLFTLACFGAGNAILALASIGFLYVGLKPPQAELGMMMVELFRYYHQALWVLAQPI 251
            + + +      G   AIL +A++GFL +G + P  E G M+ +       A W +  P 
Sbjct: 211 NIMDTMIIQTTLGISAAILDIAALGFLNLGAQAPSPEWGAMVSQGLDNLLTAPWTVTIPG 270

Query: 252 LVVFILVLSFQMLAKG 267
           + +   VL+  ++  G
Sbjct: 271 VAILCSVLAINLVGDG 286