Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  173 bits (439), Expect = 4e-48
 Identities = 103/310 (33%), Positives = 163/310 (52%), Gaps = 6/310 (1%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M   L+ R   A+ VA +V  ++F L+  + GD+A  I     G     ++    +R + 
Sbjct: 1   MLGFLLRRLGIAICVAITVSVISFSLLH-LSGDLATAI-----GGPEATSEQIEQIRVQY 54

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD+     Y  WL DLL L+LG S    E V + +   L  +L L   A  ++L +AIP
Sbjct: 55  GLDKPLPTQYFNWLGDLLRLDLGDSFFFQESVYNLVASRLPITLGLGAMALGIALLVAIP 114

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLIL 180
           +GV    + D W D LAL  +++ +A P F   L L+++FA+ L WLPV+G       ++
Sbjct: 115 LGVLAAVKRDTWVDRLALSIAVLGQAMPSFWFALMLIVVFAVTLKWLPVSGNSTLLHFVM 174

Query: 181 PALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFV 240
           PA+AL         R+ R     VL S Y   AR KGL   +   +HA RN  +PV+A  
Sbjct: 175 PAIALGYYATPAIMRLTRAGMLDVLSSDYIRTARAKGLRPARVLFKHALRNALIPVVALA 234

Query: 241 GIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLV 300
            ++   ++ G V+IE++FS  G+G     AI + D P++Q   L++ ++++ L  L D++
Sbjct: 235 AVEFGFMLGGSVVIETVFSLQGIGQLAWDAIARDDFPVVQAVVLLIAVIYIILTLLADVL 294

Query: 301 QYALDPRLRL 310
              LDPR+R+
Sbjct: 295 NALLDPRIRV 304