Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  174 bits (442), Expect = 2e-48
 Identities = 103/311 (33%), Positives = 165/311 (53%), Gaps = 5/311 (1%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGD-VAYRIAAGRYGYDYVNADAALAVRAE 59
           M++ ++ R  QAL V W   ++T+ ++  +PGD ++  ++A     D ++A      +  
Sbjct: 1   MSRYILSRIAQALLVLWGAYSVTYFILYLLPGDTLSIMLSASGVEIDSLSAQDLAKAKLY 60

Query: 60  LGLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAI 119
            GLDR  FE Y+  LW  +H + G+SL  + PV   ++  L  +L LAG A +LSL    
Sbjct: 61  YGLDRGIFEQYVDLLWGAIHGDFGNSLTLNRPVSELLIERLPQTLSLAGLAIVLSLIGGT 120

Query: 120 PIGVYCGKRTDRWADNLALLTSI--MIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKF 177
            +         RW      L+ +  +  + PVF +GL  + LFA  L W P  G      
Sbjct: 121 GLAYLTAYV--RWQPLKVALSRLPSLGFSVPVFWLGLLFIQLFAFTLGWFPATGNQGFSS 178

Query: 178 LILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVM 237
           LILPA+ LA+  AA+ +++++     V + PY   A  KGL   Q   RHA +N ALP++
Sbjct: 179 LILPAVTLAIPSAAVYAQVLQRGFQGVWKEPYIITAYAKGLTRAQVQARHAFKNAALPLL 238

Query: 238 AFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLV 297
             +G+Q  + V G V++E++F+  GVG     A+ ++DIP++     V    FV +N +V
Sbjct: 239 TLIGLQVGNTVSGAVLVETIFARSGVGRLAQEAVLRQDIPVVLAIVAVSAAAFVVVNLIV 298

Query: 298 DLVQYALDPRL 308
           DL+  ALDPR+
Sbjct: 299 DLLYPALDPRI 309