Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  159 bits (403), Expect = 6e-44
 Identities = 97/313 (30%), Positives = 168/313 (53%), Gaps = 10/313 (3%)

Query: 3   KILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGL 62
           + ++ R  Q L V + +  +TFIL+R IPGD A  +   R         A   +RA+ GL
Sbjct: 5   RFVLTRPLQFLPVIFGISIITFILVRLIPGDPARNLLGAR-----ATPSAIAKIRAQYGL 59

Query: 63  DRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIG 122
           D   ++ Y  +L +L    +G S++    V+  I   +  ++ L  ++ +L++ IA+P+ 
Sbjct: 60  DEPMWQQYFYFLKNLADGEMGKSILYKIDVLKLIATRVEPTIALVLSSVVLAVLIAVPMA 119

Query: 123 VYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHP-----KF 177
               + + +  D++  + S      P F +GL L+ILF+++L+ LPV+G+G         
Sbjct: 120 ALAARNSGKAPDHIVRVVSTFGIGFPPFWLGLMLMILFSVKLDVLPVSGYGATFGDKLAH 179

Query: 178 LILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVM 237
           LILP+L +AL ++ +  R +R A  + L+S     AR +G+     F RH   N  +P +
Sbjct: 180 LILPSLTVALSLSTVLVRSLRAAMIESLKSDVATAARARGMPERIVFWRHVVPNSLVPTI 239

Query: 238 AFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLV 297
             + +    L+ G V++ES+F+ PG+G  L  AIF RD  ++QG A+V     V +N + 
Sbjct: 240 NLLAVNIGWLIGGTVVVESVFALPGMGQLLVRAIFSRDYMVVQGVAMVFACATVLVNFIA 299

Query: 298 DLVQYALDPRLRL 310
           D+V  A+DPR++L
Sbjct: 300 DIVTVAVDPRVKL 312