Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  180 bits (456), Expect = 5e-50
 Identities = 105/302 (34%), Positives = 166/302 (54%), Gaps = 4/302 (1%)

Query: 12  ALFVAWSVGT--LTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDRSAFEL 69
           AL V   +G   + F+++R  P D A      R         A    R  LGLD+     
Sbjct: 10  ALLVPMLLGASLVIFLMLRLGPSDPAMDYL--RLSRIPPTVQALAETRQRLGLDQPLAVQ 67

Query: 70  YLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRT 129
           Y  WL   LHL+ G S  +  PV+  ++H L  +L LAG A  L+L ++IP+G++  +R 
Sbjct: 68  YWVWLNKALHLDFGVSYATGRPVLPDLLHYLPATLHLAGVALALTLGLSIPLGMWAARRR 127

Query: 130 DRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLILPALALALGM 189
           D   D +    + +  + P F +G  LV++F+++L WLP  G G  + +I+PA+A+A   
Sbjct: 128 DALPDQIVRGVAFLGVSMPNFWLGFLLVLVFSVELGWLPAMGRGGAEHMIMPAVAIAFMS 187

Query: 190 AAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQAVSLVE 249
            ++++R++R +  +V    +  +ARL+GL+  +    H  RN  LP++   G+    L+ 
Sbjct: 188 LSINARLLRASMLEVSGQRHVYYARLRGLSAAKVERAHILRNALLPIITATGMHVGELIG 247

Query: 250 GIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYALDPRLR 309
           G ++IES+F WPGVG     AIF RD P+IQ   L+M L+FV  N +VD+V    DPR+R
Sbjct: 248 GTLVIESIFGWPGVGRFAVSAIFNRDYPVIQCFTLLMVLIFVLCNLIVDIVYAWADPRIR 307

Query: 310 LS 311
           L+
Sbjct: 308 LA 309