Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  158 bits (399), Expect = 2e-43
 Identities = 92/304 (30%), Positives = 158/304 (51%), Gaps = 17/304 (5%)

Query: 24  FILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDRSAFELYLQWLWDLLHLNLG 83
           F+L++  PGD    + A   G D   A     +R   GLD        ++L  L+  +LG
Sbjct: 26  FLLLQLAPGDTVDALLAQMGGGD---AQIIETLRHFYGLDAPVAVQLGRYLLRLVQFDLG 82

Query: 84  HSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTDRWADNLALLTSIM 143
           +S +  +PVI  I+  L  +LLL GA+ ++++   + +GV   +R ++W D L     ++
Sbjct: 83  YSAIYGKPVIDVIVERLPVTLLLMGASLVVAVSGGVALGVLAARRVNKWPDTLISTLGLV 142

Query: 144 IKAQPVFLIGLGLVILFALQLNWLPVAGFGH--------------PKFLILPALALALGM 189
             A P F +GL  V++FA++L WLP  GF                 + + LP + L+L  
Sbjct: 143 FYATPSFWLGLMAVVVFAVKLGWLPPGGFEEVGAGYQGLTRALDIARHMALPTITLSLIF 202

Query: 190 AAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQAVSLVE 249
            A   R++R +  +V    +   AR KG++  +  T H  RN  LP++  +G+ A +++ 
Sbjct: 203 LATYLRIMRASMLEVSSLDFVRTARAKGVDETKIVTHHVLRNALLPMLTLIGLNASTMLG 262

Query: 250 GIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYALDPRLR 309
           G V++ES+F+ PG+G     ++ QRD+  + G  L+  +L + +N +VDL+   LDPR+R
Sbjct: 263 GSVVVESVFTLPGLGRLAYESVVQRDLNTLLGIVLLSAVLVIVVNFIVDLLYARLDPRIR 322

Query: 310 LSRH 313
              H
Sbjct: 323 AKGH 326