Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  168 bits (425), Expect = 2e-46
 Identities = 103/317 (32%), Positives = 164/317 (51%), Gaps = 13/317 (4%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M   L+ R    L V   V  + F+++R  PGD A  I  G  G     A+    VRA+L
Sbjct: 1   MPVFLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIV-GATG----TAEDIARVRADL 55

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD      +++W   +L  +LG S    + V+  I   +  +L L+    ++++ IA+P
Sbjct: 56  GLDDPMPVQFVRWAGQMLQGDLGESFFMKQTVVALIAQRIEPTLSLSAMTLVMTILIAVP 115

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAG---FGHP-- 175
           +GV    R   W D   +  S++  + P F+IG  L+ LFA+    LPV G   FG    
Sbjct: 116 LGVIAAWRHGGWLDRALMGFSVLGFSIPAFVIGYCLIWLFAMHWQMLPVQGYVRFGDDPS 175

Query: 176 ---KFLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNI 232
              + LI+PA+ L++   A+ +R+ R A A+ +   Y   AR KG++  +   RHA  N 
Sbjct: 176 RWLRHLIMPAVTLSIIYVALIARVTRAAVAEAMTEDYIRTARAKGISEVRVLMRHALANA 235

Query: 233 ALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVA 292
           A+P++  +GI    L+ G+V+ E++F+ PG+G     A+  RD P+IQG  L   +L++ 
Sbjct: 236 AVPIVTVIGIGVAMLIGGVVVTEAVFAIPGLGQLTVDAVLSRDFPLIQGITLFFSVLYML 295

Query: 293 LNTLVDLVQYALDPRLR 309
           +N  VDL     DPR+R
Sbjct: 296 INLAVDLSYLLFDPRIR 312