Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., ABC-type dipeptide/oligopeptide/nickel transport system, permease component from Dechlorosoma suillum PS

 Score =  175 bits (443), Expect = 1e-48
 Identities = 105/320 (32%), Positives = 170/320 (53%), Gaps = 18/320 (5%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M   ++ R   A+ +A SV  ++F+L+   PGD    IA      + + A     +++  
Sbjct: 1   MFAYILKRLIYAIPIALSVTVVSFVLVYLAPGDPLNAIAPADAPEEVIQA-----LKSAY 55

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD+     Y  WL   +  +LG S+ S   V   ++  + ++LLLAG A  + + +   
Sbjct: 56  GLDKPVPVQYGLWLMRAVQGDLGLSIASGREVTAEVLSAVSNTLLLAGMAAAIGVVLGCI 115

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFG------- 173
           +G   G R   W D  A   S++  + P + +GL L ILF++ L W P  G G       
Sbjct: 116 LGALAGYRHGTWIDKAATALSVVGVSIPHYWLGLVLTILFSIWLPWFPAMGAGPGGSGEW 175

Query: 174 -----HPKFLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHA 228
                H ++L+LPAL L++    + +R +R   A +L   +    R +GL+    F RH 
Sbjct: 176 LWDLEHLRYLVLPALTLSVIPMGIITRTVRALVADMLGQEFVTALRARGLSGGAVF-RHV 234

Query: 229 QRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGL 288
            +N A  V+A  G+Q   L+ G +++E++F+WPG G  L+ AIFQRDIP++QG+ LV+ +
Sbjct: 235 AKNTAPTVLAVAGLQIGYLMGGSILVETVFAWPGTGFLLNTAIFQRDIPLLQGTILVLCM 294

Query: 289 LFVALNTLVDLVQYALDPRL 308
            FV LN LVD++Q  +DPR+
Sbjct: 295 FFVVLNLLVDILQPLIDPRM 314